PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012265-PA
Common NameOsI_10828
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 468aa    MW: 49705.5 Da    PI: 6.9471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012265-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10201229331
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                       ++h+e+ErrRR+riN  +++Lr+llP+ +
  BGIOSGA012265-PA 201 KSHSEAERRRRERINAHLARLRSLLPNTT 229
                       79************************962 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.68198285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-8201231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-8201228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-7202234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.7E-5265319No hitNo description
CDDcd048733.39E-6265311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGAHGDHRHH HHHQEAGVLV DEEEEEVIEQ ACGGPTSGVV EQEVGGDGGG VCQDAAGMVF  60
EATSSVGSVS ATMGPPPIMC WPPPAQPVHG AIHHHHNLGG GGGQQSPFFP LLPPLPPQPP  120
PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF  180
GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK TSEITEEACP  240
LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR ALKALRLRAL KAEITTLGGR  300
VKNVLVVTGD DSAAAAALRG DGRGRRAAGG GDAGAHVAAA HGRVHPGRAA RRHGADGVGH  360
RGVRGVRRRR WAQAAAHHEP LGDPREQILH HNAVLSSIKA ITYISTTSIH AITDSIMYTV  420
TMSWCTREAG RGYMSKSEDN GANSSMYHEV EKRHSSSISF NAYGGTHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547430.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329918580.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649780.11e-158PREDICTED: transcription factor bHLH30-like
TrEMBLA2XER40.0A2XER4_ORYSI; Uncharacterized protein
STRINGOGLUM03G11280.11e-160(Oryza glumipatula)
STRINGOS03T0260600-011e-160(Oryza sativa)
STRINGONIVA03G12280.11e-160(Oryza nivara)
STRINGORGLA03G0109100.11e-160(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-35bHLH family protein