PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012030-PA
Common NameOsI_10352
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 535aa    MW: 59647.9 Da    PI: 6.2584
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012030-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.4e-1281675352374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++++ +c +av++++    + l+++l++++s +g+pmqRl ay++e+L arl+++++ lyk+l+++e +   s e +++++l++e++P++kf+
  BGIOSGA012030-PA 167 KQVIAACGKAVDENS-WYRDLLISELRNMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SFELMSYMHLLYEICPFFKFG 255
                       677888999998854.4568899*********************************************9...99999**************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       ++ aN aI eav+ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g+rL ++A+++g+pfefn+ v  +
  BGIOSGA012030-PA 256 YMSANGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLFNIAQSCGLPFEFNA-VPAA 347
                       *******************************************************8888889999***********************.7999 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        +++ le+L++++gE+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++  pr+
  BGIOSGA012030-PA 348 SHEVMLEHLDIRSGEVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRD 440
                       99999**************************************************************************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       +++ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl++aGF+p+pls  +++++k ll  ++s  y++ee++g+l+lgWk+r+Lv+ S
  BGIOSGA012030-PA 441 DKKRISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLSMAGFRPYPLSALVNNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSS 532
                       *******************************************************************66.*********************** PP

              GRAS 372 aWr 374
                       aWr
  BGIOSGA012030-PA 533 AWR 535
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.845140516IPR005202Transcription factor GRAS
PfamPF035141.9E-125167535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSMQASNRPY RYPDNSQIPY YSRSSMHVGQ NGTYHVQQNH EDLYASSDDG SQNGNSKAQG  60
LQAQYCTLDS SSGNFVYPAH SSTSSHISGS PISQQDSHSE HTSGSPASAS CVTEVPGLRF  120
TTIEEIENAM FGPEPDTVSS DCSLLTDSAF YQDNWREHLG INTGDLKQVI AACGKAVDEN  180
SWYRDLLISE LRNMVSISGE PMQRLGAYML EGLVARLSST GHALYKSLKC KEPTSFELMS  240
YMHLLYEICP FFKFGYMSAN GAIAEAVKGE NFVHIIDFQI AQGSQWATMI QALAARPGGP  300
PYLRITGIDD SNSAHARGGG LDIVGRRLFN IAQSCGLPFE FNAVPAASHE VMLEHLDIRS  360
GEVIVVNFAY QLHHTPDESV GIENHRDRIL RMVKGLSPRV VTLVEQEANT NTAPFFNRYL  420
ETLDYYTAMF EAIDVACPRD DKKRISTEQH CVARDIVNLI ACEGAERVER HEPFGKWRAR  480
LSMAGFRPYP LSALVNNTIK KLLDSYHSYY KLEERDGALY LGWKNRKLVV SSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-581635351375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.52520.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329834090.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630858.10.0scarecrow-like protein 21
RefseqXP_015630859.10.0scarecrow-like protein 21
RefseqXP_015630860.10.0scarecrow-like protein 21
RefseqXP_015630861.10.0scarecrow-like protein 21
RefseqXP_015630862.10.0scarecrow-like protein 21
RefseqXP_015630863.10.0scarecrow-like protein 21
RefseqXP_025879855.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLB8AQ190.0B8AQ19_ORYSI; Uncharacterized protein
TrEMBLQ10QK30.0Q10QK3_ORYSJ; Chitin-inducible gibberellin-responsive protein 2, putative, expressed
STRINGOS03T0193000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]