 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA012017-PA |
| Common Name | HOX13, OsI_10318 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 312aa MW: 33684.8 Da PI: 4.3765 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA012017-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.4 | 5.9e-19 | 73 | 125 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le+ F +++++ ++++++A+ lgL+ rqV vWFqNrRa++k
BGIOSGA012017-PA 73 KRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 125
4467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 121.5 | 4.3e-39 | 71 | 164 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray.dalkeenerLekeveeLreelk 92
ekkrrl+ eqv++LE+sF++++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++ dal+++ ++L++++++L++e++
BGIOSGA012017-PA 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHnDALRADCDALRRDKDALAAEIR 163
69*****************************************************************98747899**************9998 PP
HD-ZIP_I/II 93 e 93
e
BGIOSGA012017-PA 164 E 164
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MKRPTSSSRK SKKQGEDLAF SEEGSLPAVT MEQKDEAEME EVDDEEEEEV DEDMAGGHAA 60
QSPSPSCGLG EKKRRLALEQ VRALERSFDT DNKLDPDRKA RIARDLGLQP RQVAVWFQNR 120
RARWKTKQLE RDFAALRAQH NDALRADCDA LRRDKDALAA EIRELREKLP TKPADTAASV 180
KVEAGNDAAA GAAAATVCKD GSSDDSDSSV VFNDEASPYS GAAFIGFGPS FLVDDASAAT 240
VGCSSSLPAL ESKWHGPYSD DSCKGGVYGF TEEWLAACSG EMAGNDAAGF FSDEHASNLN 300
FGWCASGNEG WE
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 119 | 127 | RRARWKTKQ |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Os.38013 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT831039 | 0.0 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
