PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011947-PA
Common NameOsI_10186
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 338aa    MW: 36492 Da    PI: 8.096
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011947-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.9e-40102162262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  BGIOSGA011947-PA 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSVS 162
                       7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3298159IPR003851Zinc finger, Dof-type
PfamPF027012.4E-32104160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.761106160IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGECKVGGGG GGGDCLIKLF GKTIPVPEPG ACAAGDVDKD LQHSGSSTTE PKTQENTVQD  60
STSPPPQPEV VDTEDSSADK NSSENQQQQG DTANQKEKLK KPDKILPCPR CSSMDTKFCY  120
YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS VSAASHFLQR VRAALPGDPP  180
LYAPVKTNGT VLSFGSDLST LDLTEQMKHL KDKFIPTTGI KNTDEMPVVS TMTNCFRLGK  240
HPRDGDEELD SKGNGKVWVP KTVRIDDVDE VARSSIWSLI GIKGDKVGAD HGRGCKLAKV  300
FESKDEAKTS THTAISSLPF MQGNPAALTR SVTFQEGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.119870.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166320520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609000.0AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBankAK0994900.0AK099490.1 Oryza sativa Japonica Group cDNA clone:J013026L11, full insert sequence.
GenBankAK1045230.0AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBankAY2244290.0AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.
GenBankCT8318560.0CT831856.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI220N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631794.11e-159cyclic dof factor 1
TrEMBLA2XD010.0A2XD01_ORYSI; Uncharacterized protein
STRINGEMT224461e-177(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.16e-61cycling DOF factor 1