PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011741-PA
Common NameOsI_09781
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 292aa    MW: 30803.1 Da    PI: 9.9644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011741-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14116167155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  BGIOSGA011741-PA 116 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 167
                       79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15107174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-14114170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.01E-12114167No hitNo description
PROSITE profilePS5088815.142115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEQWAAAAAA ADQAAASAGA GQMPFLALLQ GAMEADGGGG GDGRKRHAAA AAFASCCPCP  60
PVADLDLLES CVTQAAAPPV TAPATRAERR RKRPRPRPRA APPPEKRKKP EEAENQRMTH  120
IAVERNRRRL MNDHLASLRS LIPSNYIPRG DQATVVGGAI DYVKQLEQQL VALQAAAAER  180
SGVGVVATAA TAASDGVFVS PQYTSYSEAR GGSGVDVEAT AAVGGHVRVR VAGRRWTGRL  240
VRAVAAMEDL RLTVLHLAVT SVGHDAVVYC FNLKVKTTTT LHHLLLHVPS FF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18898RRRKRPRPRPR
29096RKRPRPR
390108RKRPRPRPRAAPPPEKRKK
49195KRPRP
5116127RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.20.0transcription factor bHLH57
TrEMBLB8ALX70.0B8ALX7_ORYSI; Uncharacterized protein
STRINGONIVA02G30660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-29bHLH family protein