PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011687-PA
Common NameHB1, HOX10, OsI_009462
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 857aa    MW: 93891.1 Da    PI: 6.0857
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011687-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182785357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++ +q+kvWFqNrR ++k+
  BGIOSGA011687-PA 27 KYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                      5678****************************************************996 PP
2START1671.3e-521653722204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++  e+   i  g  g+++
  BGIOSGA011687-PA 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRNLEVFTMIPAGngGTVE 256
                       789*******************************************************9999988888.****************9999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l
  BGIOSGA011687-PA 257 LVYTQLYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVL 349
                       ****************************************9999999898999**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+++ ++k+++a+l++ +
  BGIOSGA011687-PA 350 RPLYESSRVVAQKMTTAALRHIR 372
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-18985IPR009057Homeodomain-like
PROSITE profilePS5007115.4672286IPR001356Homeobox domain
SMARTSM003894.1E-162490IPR001356Homeobox domain
SuperFamilySSF466897.27E-162688IPR009057Homeodomain-like
CDDcd000861.21E-162787No hitNo description
PfamPF000468.6E-162885IPR001356Homeobox domain
CDDcd146864.37E-679118No hitNo description
PROSITE profilePS5084828.181155383IPR002913START domain
CDDcd088751.68E-72159375No hitNo description
SMARTSM002345.9E-41164374IPR002913START domain
SuperFamilySSF559612.06E-37164376No hitNo description
Gene3DG3DSA:3.30.530.204.7E-22164350IPR023393START-like domain
PfamPF018523.9E-50165372IPR002913START domain
PfamPF086702.1E-48714856IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MAAAVAMRGS SSDGGGYDKV SGMDSGKYVR YTPEQVEALE RVYADCPKPT SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTPLANDT SCESNVTTPQ NPLRDASNPS GLLSIAEETL TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFRDCRN  240
LEVFTMIPAG NGGTVELVYT QLYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPSAASAQQY VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG  420
GDGVEDVVIA CNSTKKIRSN SNAGIAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASTLKTSACS LPGLRPMRFS GSQIIIPLAH TVENEEILEV VRLEGQPLTH  540
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDDFPDE TPLISSGFRV IPLDMKTLEL  600
IEAFGFKYSL GKIKQDGASS GRTLDLASSL EVGSATAQAS GDASADDCNL RSVLTIAFQF  660
PYELHLQDSV AAMARQYVRS IVSAVQRVSM AISPSQTGLN AGQRIISGFP EAATLARWVC  720
QSYHYHLGVE LLSQSDGDAE QLLKMLWHYQ DAILCCSFKE KPVFTFANKA GLDMLETSLV  780
ALQDLTLDRI FDEPGKEALF SNIPKLMEQG HVYLPSGVCM SGMGRHVSFD QAVAWKVLAE  840
DSNVHCLAFC FVNWSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.226650.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329875870.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023780.0AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence.
GenBankAY4259910.0AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649248.10.0PREDICTED: homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A0E0J4U40.0A0A0E0J4U4_ORYNI; Uncharacterized protein
STRINGONIVA11G21180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]