PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA011521-PA

Common Name

OsI_09856

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Nin-like

Protein Properties

Length: 919aa MW: 101848 Da PI: 6.1043

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA011521-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	620	670	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ BGIOSGA011521-PA 620 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 670 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	609	690	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-26	622	670	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.1E-25	819	903	No hit	No description
SuperFamily	SSF54277	1.01E-22	819	903	No hit	No description
PROSITE profile	PS51745	23.255	821	904	IPR000270	PB1 domain
SMART	SM00666	2.0E-25	821	904	IPR000270	PB1 domain
Pfam	PF00564	1.1E-17	822	903	IPR000270	PB1 domain
CDD	cd06407	4.00E-43	822	903	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MEQKPSPPPP PRSDEEEDGL MGCGMGGTGD IAGGDLDLME EFLLATPGLD LSEFWHPGAA 60 SPFSPLFDIG SSVTTLTTPA PAAGEDDRDE AEMPSRGGGG LEVSPAHRGW TFQTAPQEVA 120 VEPTVKERLR RALERIASQS QSQAQRGDGE LLVQVWVPTR IGDRQVLTTC GQPFWLDRRN 180 QRLASYRTVS MKYQFSADES ARADLGLPGR VFVGRVPEWT PDVRYFSTEE YPRVQHAQYF 240 DIRGSVALPV FEPRSRACLG VVELVMTTQK VNYSAEIENI CNALKEVDLR SSDVSSDPRS 300 KVVDASYRAI IPEIMDVLRA VCDTHNLPLA QTWIPCICQA KRGSRHSDES YKHCVSTVDE 360 ACYVRDCSVL GFHQACSEHH LFRGEGVVGR AFGTNEPCFS PDITTYSKTQ YPLSHHAKLF 420 GLRAAVAIQL RSVKTGSLDF VLEFFLPMKC INTEEQRAML NSLSNTIQQV CYTLRVVKPK 480 ELVNDGPFEI SQPTRPEFYA KSVHEDLDEL CSSINVPGRT TSLEASEEVS SWIASLVDAQ 540 NKGGKGEIDV DLPFGFSKQD DEGFSVTAGW HTSPVMAPDG SMFSGFKRHE DYDVKENTCS 600 SDPSNSNSDK AVEKRRTKTE KTVSLQDLRK HFAGSLKEAA KNLGVCPTTL KRICRQHGIN 660 RWPSRKIKKV GHSLKKLQMV IDSVHGPEGT VQLSSLSMKI LPRPHVPDRP CEGRFTSHTS 720 GSNSISPSCS QSSNSSLGCS SVPKTQQQHG SAPQLAVKEE ISMDENQCST LIKSASHAEA 780 ELQMFVEERP TMLFRSQSQV LLSEHKPIEN MSNVQKARSD SLKIKAIYGE ERCIFRLQPS 840 WGFQRLKEEI VKRFGISQDT HVDLKYLDDE SEWVLLTCDA DLLECIDVYK SSSNQTVRIL 900 VNPSIQPLLN ASFGQTGLS

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MEQKPSPPPP PRSDEEEDGL MGCGMGGTGD IAGGDLDLME EFLLATPGLD LSEFWHPGAA  60
SPFSPLFDIG SSVTTLTTPA PAAGEDDRDE AEMPSRGGGG LEVSPAHRGW TFQTAPQEVA  120
VEPTVKERLR RALERIASQS QSQAQRGDGE LLVQVWVPTR IGDRQVLTTC GQPFWLDRRN  180
QRLASYRTVS MKYQFSADES ARADLGLPGR VFVGRVPEWT PDVRYFSTEE YPRVQHAQYF  240
DIRGSVALPV FEPRSRACLG VVELVMTTQK VNYSAEIENI CNALKEVDLR SSDVSSDPRS  300
KVVDASYRAI IPEIMDVLRA VCDTHNLPLA QTWIPCICQA KRGSRHSDES YKHCVSTVDE  360
ACYVRDCSVL GFHQACSEHH LFRGEGVVGR AFGTNEPCFS PDITTYSKTQ YPLSHHAKLF  420
GLRAAVAIQL RSVKTGSLDF VLEFFLPMKC INTEEQRAML NSLSNTIQQV CYTLRVVKPK  480
ELVNDGPFEI SQPTRPEFYA KSVHEDLDEL CSSINVPGRT TSLEASEEVS SWIASLVDAQ  540
NKGGKGEIDV DLPFGFSKQD DEGFSVTAGW HTSPVMAPDG SMFSGFKRHE DYDVKENTCS  600
SDPSNSNSDK AVEKRRTKTE KTVSLQDLRK HFAGSLKEAA KNLGVCPTTL KRICRQHGIN  660
RWPSRKIKKV GHSLKKLQMV IDSVHGPEGT VQLSSLSMKI LPRPHVPDRP CEGRFTSHTS  720
GSNSISPSCS QSSNSSLGCS SVPKTQQQHG SAPQLAVKEE ISMDENQCST LIKSASHAEA  780
ELQMFVEERP TMLFRSQSQV LLSEHKPIEN MSNVQKARSD SLKIKAIYGE ERCIFRLQPS  840
WGFQRLKEEI VKRFGISQDT HVDLKYLDDE SEWVLLTCDA DLLECIDVYK SSSNQTVRIL  900
VNPSIQPLLN ASFGQTGLS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.11655	0.0	callus\| flower\| leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32985255	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A2XC34	0.0	A2XC34_ORYSI; Uncharacterized protein
STRING	ORUFI03G02230.1	0.0	(Oryza rufipogon)
STRING	ONIVA03G02090.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]