PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HSF

Protein Properties

Length: 110aa MW: 11980.5 Da PI: 4.3856

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA011509-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	85.6	6.7e-27	39	97	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+Y BGIOSGA011509-PA 39 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTY 97 9********************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-28	31	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.6E-23	35	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.04E-24	36	98	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.0E-17	39	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.7E-23	39	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-17	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-17	90	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MAEQGAGEAD AGGGEPPAAA VMTAAAEALA GQRSLPTPFL TKTYQLVEDP AVDDVISWNE 60 DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYLSR TASLLSVWML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-19	29	97	11	78	Heat shock factor protein 1
5d5u_B	7e-19	30	100	21	90	Heat shock factor protein 1
5d5v_B	7e-19	30	100	21	90	Heat shock factor protein 1
5d5v_D	7e-19	30	100	21	90	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.11941	1e-157	callus\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32991754	1e-157

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005681	1e-159	AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBank	AP014965	1e-159	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-159	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612527.1	1e-63	heat stress transcription factor B-2c isoform X4
Refseq	XP_025876147.1	1e-63	heat stress transcription factor B-2c isoform X5
Swissprot	Q652B0	6e-64	HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBL	B8AMF0	4e-75	B8AMF0_ORYSI; Uncharacterized protein
STRING	ORUFI09G18440.1	8e-63	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	1e-40	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rerksiri W,Zhang X,Xiong H,Chen X Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal, 2013. 2013: p. 397401 [PMID:24459431]