PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011366-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 384aa    MW: 41702.3 Da    PI: 6.9356
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011366-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-18124177356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  BGIOSGA011366-PA 124 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 177
                       4568999**********************************************9 PP
2HD-ZIP_I/II1253.4e-40123212190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e
  BGIOSGA011366-PA 123 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAE 212
                       69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-19116181IPR009057Homeodomain-like
PROSITE profilePS5007117.41119179IPR001356Homeobox domain
SMARTSM003891.2E-17122183IPR001356Homeobox domain
PfamPF000462.3E-15124177IPR001356Homeobox domain
CDDcd000862.15E-16124180No hitNo description
Gene3DG3DSA:1.10.10.608.8E-19126187IPR009057Homeodomain-like
PRINTSPR000311.4E-5150159IPR000047Helix-turn-helix motif
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5159175IPR000047Helix-turn-helix motif
PfamPF021832.3E-10179212IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHHEQQQ HHHHLGPPPP  60
PPPHPHNPFL PSSAQCPSLQ EFRGMAPMLG KRPMSYGDGG GGGDEVNGGG EDELSDDGSQ  120
AGEKKRRLNV EQVRTLEKNF ELGNKLEPER KMQLARALGL QPRQVAIWFQ NRRARWKTKQ  180
LEKDYDALKR QLDAVKAEND ALLNHNKKLQ AEERRSMWVS VLAERLLESV PFSPPRIVAL  240
KGREAASELI NLNKETEASC SNRSENSSEI NLDISRTPPP DAAALDAAPT AHHHHHGGGG  300
GGGGGGGMIP FYTSIARPAS GGGVDIDQLL HSSSGGAGGP KMEHHGGGGN VQAASVDTAS  360
FGNLLCGVDE PPPFWPWPDH QHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.594240.0panicle| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629266.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W90.0HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA3AEK50.0A3AEK5_ORYSJ; Uncharacterized protein
STRINGORUFI03G05090.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-65HD-ZIP family protein