![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA011302-PA | ||||||||
Common Name | OsI_10332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 989aa MW: 110737 Da PI: 5.8122 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.8 | 2.8e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +f BGIOSGA011302-PA 20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINF 112 55599**************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhylevk BGIOSGA011302-PA 113 QRRSYWMLEEDYMHIVLVHYLEVK 136 *********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.727 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.2E-76 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.5E-48 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 4.9E-7 | 400 | 485 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 5.3E-8 | 402 | 477 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.49E-17 | 402 | 487 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 0.00329 | 402 | 489 | No hit | No description |
SuperFamily | SSF48403 | 8.24E-17 | 591 | 695 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.3E-18 | 593 | 699 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.08E-13 | 598 | 692 | No hit | No description |
PROSITE profile | PS50297 | 18.059 | 600 | 704 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.763 | 600 | 632 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.013 | 633 | 662 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.843 | 633 | 665 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1400 | 672 | 701 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 4.51E-8 | 804 | 857 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.075 | 806 | 828 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 807 | 836 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0032 | 808 | 827 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 829 | 851 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 830 | 854 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-4 | 832 | 851 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 989 aa Download sequence Send to blast |
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQVSHADSPL SQLPSQTTEG ESSVSGQASE 180 YDETESGSYQ GLQATAPNTG FYSHGQDNLP VVLNESDLGT AFNGPNSQFD LSLWIEAMKP 240 DKGTHQIPLY QAPVPSEQSP FTGGPGIESF TFDEVYNNGL SIKDVDGDDT DGETPWQIPN 300 ASGTFATADS FQQNDKTLEE AINYPLLKTQ SSSLSDIIKD SFKKNDSFTR WMSKELAEVD 360 DSQITSSSGV YWNSEEADNI IEASSSDQYT LGPVLAQDQL FTIVDFSPTW TYAGSKTRVF 420 IKGNFLSSDE VKRLKWSCMF GEFEVPAEII ADDTLVCHSP SHKPGRVPFY VTCSNRLACS 480 EVREFDFRPQ YMDAPSPLGS TNKIYLQKRL DKLLSVEQDE IQTTLSNPTK EIIDLSKKIS 540 SLMMNNDDWS ELLKLADDNE PATDDKQDQF LQNRIKEKLH IWLLHKVGDG GKGPSMLDEE 600 GQGVLHLAAA LGYDWAIRPT IAAGVNINFR DAHGWTALHW AAFCGRERTV VALIALGAAP 660 GAVTDPTPSF PSGSTPADLA SANGHKGISG FLAESSLTSH LQTLNLKEAM RSSAGEISGL 720 PGIVNVADRS ASPLAVEGHQ TGSMGDSLGA VRNAAQAAAR IYQVFRMQSF QRKQAVQYED 780 ENGAISDERA MSLLSAKPSK PAQLDPLHAA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH 840 VRGHQVRKHY RKIIWSVGIV EKVILRWRRR GAGLRGFRPT ENAVTESTSS SSGNVTQNRP 900 AENDYDFLQE GRKQTEERLQ KALARVKSMV QYPDARDQYQ RILTVVTKMQ ESQAMQEKML 960 EESTEMDEGL LMSEFKELWD DDMPTPGYF |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.13903 | 0.0 | callus| flower| leaf| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32976669 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00042 | PBM | Transfer from AT2G22300 | Download |
![]() |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK066651 | 0.0 | AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631249.1 | 0.0 | calmodulin-binding transcription activator 1 isoform X2 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | B8APS1 | 0.0 | B8APS1_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0191000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |