PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011302-PA
Common NameOsI_10332
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 989aa    MW: 110737 Da    PI: 5.8122
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011302-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.82.8e-55201363118
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +f
  BGIOSGA011302-PA  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINF 112
                       55599**************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       qrr+yw+Lee++ +ivlvhylevk
  BGIOSGA011302-PA 113 QRRSYWMLEEDYMHIVLVHYLEVK 136
                       *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.72715141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-7400485IPR013783Immunoglobulin-like fold
PfamPF018335.3E-8402477IPR002909IPT domain
SuperFamilySSF812961.49E-17402487IPR014756Immunoglobulin E-set
CDDcd001020.00329402489No hitNo description
SuperFamilySSF484038.24E-17591695IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-18593699IPR020683Ankyrin repeat-containing domain
CDDcd002042.08E-13598692No hitNo description
PROSITE profilePS5029718.059600704IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763600632IPR002110Ankyrin repeat
SMARTSM002480.013633662IPR002110Ankyrin repeat
PROSITE profilePS500888.843633665IPR002110Ankyrin repeat
SMARTSM002481400672701IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8804857IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075806828IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407807836IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032808827IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022829851IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578830854IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4832851IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQVSHADSPL SQLPSQTTEG ESSVSGQASE  180
YDETESGSYQ GLQATAPNTG FYSHGQDNLP VVLNESDLGT AFNGPNSQFD LSLWIEAMKP  240
DKGTHQIPLY QAPVPSEQSP FTGGPGIESF TFDEVYNNGL SIKDVDGDDT DGETPWQIPN  300
ASGTFATADS FQQNDKTLEE AINYPLLKTQ SSSLSDIIKD SFKKNDSFTR WMSKELAEVD  360
DSQITSSSGV YWNSEEADNI IEASSSDQYT LGPVLAQDQL FTIVDFSPTW TYAGSKTRVF  420
IKGNFLSSDE VKRLKWSCMF GEFEVPAEII ADDTLVCHSP SHKPGRVPFY VTCSNRLACS  480
EVREFDFRPQ YMDAPSPLGS TNKIYLQKRL DKLLSVEQDE IQTTLSNPTK EIIDLSKKIS  540
SLMMNNDDWS ELLKLADDNE PATDDKQDQF LQNRIKEKLH IWLLHKVGDG GKGPSMLDEE  600
GQGVLHLAAA LGYDWAIRPT IAAGVNINFR DAHGWTALHW AAFCGRERTV VALIALGAAP  660
GAVTDPTPSF PSGSTPADLA SANGHKGISG FLAESSLTSH LQTLNLKEAM RSSAGEISGL  720
PGIVNVADRS ASPLAVEGHQ TGSMGDSLGA VRNAAQAAAR IYQVFRMQSF QRKQAVQYED  780
ENGAISDERA MSLLSAKPSK PAQLDPLHAA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH  840
VRGHQVRKHY RKIIWSVGIV EKVILRWRRR GAGLRGFRPT ENAVTESTSS SSGNVTQNRP  900
AENDYDFLQE GRKQTEERLQ KALARVKSMV QYPDARDQYQ RILTVVTKMQ ESQAMQEKML  960
EESTEMDEGL LMSEFKELWD DDMPTPGYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.139030.0callus| flower| leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329766690.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLB8APS10.0B8APS1_ORYSI; Uncharacterized protein
STRINGOS03T0191000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]