PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011179-PA
Common NameOsI_10620
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 259aa    MW: 27746.2 Da    PI: 7.8801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011179-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-1194141355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  BGIOSGA011179-PA  94 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 141
                       5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.45691140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-994141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1595154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1595156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-1096145No hitNo description
SMARTSM003533.2E-1197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPNQFHPSH CSSFPAFGGS SALPSLAFGA VATTKKEQVQ QPSPSSSNVL SFAGQVQGST  60
TTLDFSGRGW QQDDGVGVFQ QPPERRSRPP ANAQEHVIAE RKRREKLQQQ FVALATIVPG  120
LKKTDKISLL GSTIDYVKQL EEKVKALEEG SRRTAEPTTA FESKCRITVD DDDGGSASSG  180
TDDGSSSSSS PTVEASIHGS TVLLKICCKE RRGLLVMILS ELEKQGLSII NTSVVPFTDS  240
CLNITITAKA RLALPVYYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERKRRE
2100105RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997320.0AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880159.10.0transcription factor bHLH18
TrEMBLA2XE690.0A2XE69_ORYSI; Uncharacterized protein
STRINGONIVA02G39270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-31bHLH family protein