PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011172-PA
Common NameOsI_10634
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 307aa    MW: 33457.5 Da    PI: 5.3732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011172-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12134182355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  BGIOSGA011172-PA 134 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 182
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-17129197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-11129186No hitNo description
Gene3DG3DSA:4.10.280.105.2E-18131198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9134182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDLMYSPPCS AAASSQGHCF AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG  60
DTQLSRNMSI DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE  120
EYVHVRAKRG QATNSHSLAE RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS  180
LQRQVEFLSM KLSTISPELN SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL  240
SPPGLYGSVC VPNPADVHLA RAGHLASFPQ QRGLIWNEEL RNIAPAGFAS DAAGTSSLEN  300
SDSMKVE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.617090.0flower| panicle| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420030.0AK242003.1 Oryza sativa Japonica Group cDNA, clone: J075103H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631332.10.0transcription factor bHLH137 isoform X1
RefseqXP_015631334.10.0transcription factor bHLH137 isoform X1
RefseqXP_015631335.10.0transcription factor bHLH137 isoform X1
RefseqXP_025879613.10.0transcription factor bHLH137 isoform X1
RefseqXP_025879614.10.0transcription factor bHLH137 isoform X1
SwissprotQ6NKN95e-47BH074_ARATH; Transcription factor bHLH74
TrEMBLB8AJM30.0B8AJM3_ORYSI; Uncharacterized protein
TrEMBLB9F6M50.0B9F6M5_ORYSJ; Uncharacterized protein
STRINGOS03T0231950-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]