PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010988-PA
Common NameOsI_11010
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 597aa    MW: 64609.5 Da    PI: 7.2168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010988-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.00013453496654
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  BGIOSGA010988-PA 453 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 496
                       56669******************99.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.702447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-5453505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-9457507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MASPPPPPPQ PPSPSAATAG AAAAPVDALF LQNLMSRVQL RPPFLDTNSF LTQDLDEFLL  60
NEFAALSAAA GASDDDDDGE DGEGEGSDGE VVSGEARRRR TLAREEAKLE KEIVRLVLAG  120
EAEEALKPNS GQSVAVGDHH ICVGFHDDSG GVYRVWEWHG HVMIFDDEDG YSAEYIYGNH  180
FEPLAAATAR AKEKEREKRE KELSSGLRDL ILGDTGSGAN GSKENGKGGA PRVVRRNVVN  240
APAAPARLQK QQLCRWIRHD DLDMLTDELE RKRYRTLILM ADTFLANDLR QFPSAKRKAS  300
LYTSTLANIF ILMLKVSSVA VKCEASNSPS TTVGFDRMIA ADYDLFHHMS FSPSLQNLQS  360
PTFFTTRSSE SYLGESSIYG GGARPALAQF SYSQPIAATS AAHLVRWTAA GEPMTGDGGF  420
RSSKRLKTAT TATTQPPRHG VKCHAKPRNQ TTKATCKKRS QKLGDRITAL QQLVSPYGKT  480
DTASVLHEAA ACIRQLHQQI QILTAPYPGT SSSSASSQQQ VVFSVLESCS HVMSFFTAIA  540
TVLWLQDAGG GGGTATELRR RGLCVAALSP AVVSLAAEGG RRRTDVEDQK RIWFSNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK0610800.0AK061080.1 Oryza sativa Japonica Group cDNA clone:006-206-F02, full insert sequence.
GenBankAK0710430.0AK071043.1 Oryza sativa Japonica Group cDNA clone:J023079J04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8AL340.0B8AL34_ORYSI; Uncharacterized protein
TrEMBLB9F7C50.0B9F7C5_ORYSJ; Uncharacterized protein
STRINGOMERI03G11900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-16bHLH family protein