PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010604-PA
Common NameOsI_11883
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 414aa    MW: 45512.4 Da    PI: 5.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010604-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000263634021054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  BGIOSGA010604-PA 363 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 402
                       9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-6363409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-6363410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00143363407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRWLALSVDI FRKGISLNLY CRSLKFGIED LVAGIAVWVS VVAWQFFQGE RAGVLMVWQP  60
VAQTRFRVFK HENGIAVRVI ACFQPSQDCQ KILFAGCFLM GEKVNPWCHW SNPPWTESSA  120
NNLHPPDVSL DNTNSVALPT YLNSDGYIYS GVAASMPSIA ASVTDRPVSF SSRFVTTLVP  180
SVGLSTAETL RKRPLVFFHN VNNTFTVGPL LSKGTLDTVP ELQGSNETNV TDVGAQNTEC  240
MHENTEEIDA LLCSDSDEGC LKVQELNNRV RKYPMQNDTM SVESVASAGA SQPAKKRRLS  300
SGTDRSVVDT ASSARPDHSV DQKHLSHDDD AQSCCIGEVE SDHQFALREG EEAEGDDGPD  360
DRKRRRERIQ ETVAALRKIV PGGIAKDATA VLDEAICYLK YLKLKVKTLG AVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361365RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593840.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329756920.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLB8AQM70.0B8AQM7_ORYSI; Uncharacterized protein
STRINGORUFI03G20760.10.0(Oryza rufipogon)
STRINGONIVA03G21780.20.0(Oryza nivara)
STRINGOBART03G20100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820