PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010071-PA
Common NameOsI_12975
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 336aa    MW: 36921.3 Da    PI: 6.7989
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010071-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.92.3e-102532862255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps++e++ LA+++gL+++qV++WF N+R ++
  BGIOSGA010071-PA 253 WPYPSEAEKAALAESTGLDKKQVTNWFINQRKRH 286
                       58*****************************885 PP
2ELK34.73.8e-12205225222
               ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                        +++L++KYsgyL+sL++E+s
  BGIOSGA010071-PA 205 TRRHLMNKYSGYLNSLWTEIS 225
                       69******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1967111IPR005540KNOX1
PfamPF037901.1E-1969105IPR005540KNOX1
SMARTSM012561.2E-27122173IPR005541KNOX2
PfamPF037911.1E-21126171IPR005541KNOX2
PROSITE profilePS512139.027204224IPR005539ELK domain
SMARTSM011887.1E-5204225IPR005539ELK domain
PfamPF037892.3E-8206225IPR005539ELK domain
PROSITE profilePS5007112.034226289IPR001356Homeobox domain
SuperFamilySSF466896.42E-18228297IPR009057Homeodomain-like
SMARTSM003892.1E-12228293IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-25233290IPR009057Homeodomain-like
CDDcd000865.23E-13235290No hitNo description
PfamPF059206.9E-17246285IPR008422Homeobox KN domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEQFHLLASG GGSKASTTII PLCLSRDHAS TSSPSPAAAV APPAPPPPAA SEQSSHGSGA  60
GLQSSEAMIK AKIMSHPLYP SLLRAFVDCK KVGAPPEVVG RLSSLAVVTD ELESYSGDRW  120
QPAQQPAADP ELDQFMETYC YMLTRYGQEL ARPIQEAEEF FRGIEEQIDS LALDEDVSYD  180
YEDEVAGGLP EKSAAFGENE VTTTTRRHLM NKYSGYLNSL WTEISNKKKN STGHLPRDAR  240
HKLLQWWHLH YRWPYPSEAE KAALAESTGL DKKQVTNWFI NQRKRHWKPK PAAAMDAGFL  300
QMHPRYGASS SSSPAAALRV EDGGGRRSAY HPRGGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950040.0HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879711.10.0putative homeobox protein knotted-1-like 5
SwissprotQ75LX90.0KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLB8AP450.0B8AP45_ORYSI; Uncharacterized protein
STRINGORUFI03G30320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-65KNOTTED-like from Arabidopsis thaliana