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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
BGIOSGA009826-PA |
| Common Name | OsI_13479 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
HSF |
| Protein Properties |
Length: 370aa MW: 40449.1 Da PI: 4.7183 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA009826-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 108.6 | 4.6e-34 | 50 | 140 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94
Fl k+ye+++d+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkkell
BGIOSGA009826-PA 50 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKELL 133
9****************************************************************999.........**************** PP
XXXXXXX CS
HSF_DNA-bind 95 ekikrkk 101
++ikr++
BGIOSGA009826-PA 134 KTIKRRR 140
*****97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009644 | Biological Process | response to high light intensity |
| GO:0010200 | Biological Process | response to chitin |
| GO:0010286 | Biological Process | heat acclimation |
| GO:0034605 | Biological Process | cellular response to heat |
| GO:0034620 | Biological Process | cellular response to unfolded protein |
| GO:0042542 | Biological Process | response to hydrogen peroxide |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0071456 | Biological Process | cellular response to hypoxia |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MNPLRVIVKE EELDFAAAAA GEGSPSSWAV GVMDLPRPME GLGEAGPPPF LCKTYEVVDD 60
PGTDTVISWG FAGNSFVVWD ANAFAAVLLP RYFKHSNFSS FVRQLNTYGF RKVDPDRWEF 120
ANEGFLRGKK ELLKTIKRRR PPPSSPPSSS SSSSSSQHQQ QPAAACLEVG QFGRDGVVNR 180
LQRDKSVLIA EVVKLRQEQQ TTRAQMQAME ERISAAEQKQ QQMTVFLARA MKNPGFLQML 240
VDRQAGQHGA RNRVLEDALS KKRRRPIEYL LTRNGETCAA GESAAMLAAD GVAEPDGDTT 300
PRGDGGGGGD TESFWMQLLS LGLEEKQRED GVAGGVQESN SGGADVDNDE EDDDDDVDVL 360
VQSIYHLSPK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY332465 | 0.0 | AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds. |
| GenBank | AY344486 | 0.0 | AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds. |
| GenBank | AY998118 | 0.0 | AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Chauhan H,Khurana N,Agarwal P,Khurana P
Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
Mol. Genet. Genomics, 2011. 286(2): p. 171-87
[PMID:21792744] - Mittal D,Madhyastha DA,Grover A
Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
Plant Sci., 2012. 197: p. 102-13
[PMID:23116677]
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