PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 231aa MW: 24811.2 Da PI: 9.7974

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009781-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.4e-33	52	109	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ BGIOSGA009781-PA 52 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 109 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-34	36	110	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-29	43	110	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	46	111	IPR003657	WRKY domain
SMART	SM00774	8.6E-39	51	110	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	52	109	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAVSLIGFDS ACVCLIRPAA AATATATAKK GQKRARQPRF AFMTKSEIDH LEDGYRWRKY 60 GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVIT TYEGQHCHHT ASFQRGVGGA 120 AVAAHIHGAA AVALAEQMSA FVSPPPQPHM LYGLPRLHPP SSETAVSCSM PTTTSLQELN 180 NSEGLQRPGY NNSPQAAVTI AQRPPSPSVP PAVSFDKGLL DDIVPPGVRL G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	41	108	7	74	Probable WRKY transcription factor 4
2lex_A	2e-26	41	108	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.50645	0.0	callus\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	33519205	0.0

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00067	PBM	Transfer from AT1G69310	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY341859	0.0	AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631421.1	1e-159	probable WRKY transcription factor 57
Refseq	XP_015631422.1	1e-159	probable WRKY transcription factor 57
TrEMBL	A0A0N7KI30	1e-171	A0A0N7KI30_ORYSJ; Os03g0758000 protein
TrEMBL	A2XM60	1e-171	A2XM60_ORYSI; Uncharacterized protein
STRING	OS03T0758000-01	1e-171	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	2e-53	WRKY DNA-binding protein 57