PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009723-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 923aa MW: 103834 Da PI: 7.7731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009723-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.7e-23	406	491	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YA +vGFsvrk +k+ +n+ +++r + Cskeg+r+++ ++ + +++r+etrtgC a++++k + +gk++vt+ + +HnH+l BGIOSGA009723-PA 406 CYVTYAGTVGFSVRKGWLEKTATNT-TKSRAYFCSKEGFRSKSVST--DPKKPRPETRTGCLAHMTIKITVSGKYVVTEYVADHNHDLE 491 7*****************96666.99**********9988..999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03169	2.8E-11	35	123	IPR004813	Oligopeptide transporter, OPT superfamily
PROSITE profile	PS51152	8.67	280	340	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF03101	5.6E-21	406	491	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	1.9E-7	615	660	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.546	615	662	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-8	637	664	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055085	Biological Process	transmembrane transport
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MISTASSVCF PVEIFCASLG WEDYGSVSEF RHCSLHGMYH HVAVACLVVL VLAFCNTYVT 60 GVIDVNIATT FGKVVVLALG AWVGLKDSGV VTGLAAYGVI MATVSTASDL TQAFRTGYLI 120 GSSAPXGNYA NRRNKANGLD ELKEEEVQDG AAGKRKRGAN NKRNPNPVKN NSEVIEVESS 180 AEKGVGTAVP NNGQEARKMR GSKRGRTKKD VTEKDEKPVV ELEAEKEDEV VAQDGDDVEE 240 QKGEREEEME EEVQVEVQEK RGRGRPRKAD AEGNALQARV LRELGLRASQ YTNEERKKIV 300 SKYLSKRQSR PVSARPAKIA SRQALAERRK RGDGGRFLSS EGLTQPLERR SKRLEKQNLK 360 KEDKGESKED EIIEGEPDPE MEVVAGPGGE PKVGMVFLNE DKAYDCYVTY AGTVGFSVRK 420 GWLEKTATNT TKSRAYFCSK EGFRSKSVST DPKKPRPETR TGCLAHMTIK ITVSGKYVVT 480 EYVADHNHDL ETPLVDIQVL RSHKLLAKLQ QPPDPPRVVL IPNDYKNYVR TRHTKDMQLG 540 DTQAIYEYLQ RKKGEHPSFF YAIQVDEDDQ LTNVFWADVK SILDYHYFGD VLLEFELTLT 600 CMAYCCGEIG PISEYEVTVK NRPRDHFVRF DSSECMVVCS CKKFEFTGIP CCHVLKVLEV 660 RNIKELPPHY ILKRWRKDAQ SESPRENYGF EAVDEDPRFL LSKRYSMLYR TFYKIAAKAA 720 ENIEAYTYME SQCDQFIEQV ELLLQAKLHD KSSLSTILKV QQPNLFPNEA SNSETRRVSS 780 KKIKNVDTRR QQQSPLQSNK KKKGRQGLPD PEEAEVPLRV DPPTISNDIP NHLRTPTSQF 840 LATSHIMQAP YIAQQFGLSS LQGFPGISPF GQLQEPAPAP LQQSHLQQPP FHSGPQIPQV 900 IVITYTHVPF PRDFTFTDSI SNY

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MISTASSVCF PVEIFCASLG WEDYGSVSEF RHCSLHGMYH HVAVACLVVL VLAFCNTYVT  60
GVIDVNIATT FGKVVVLALG AWVGLKDSGV VTGLAAYGVI MATVSTASDL TQAFRTGYLI  120
GSSAPXGNYA NRRNKANGLD ELKEEEVQDG AAGKRKRGAN NKRNPNPVKN NSEVIEVESS  180
AEKGVGTAVP NNGQEARKMR GSKRGRTKKD VTEKDEKPVV ELEAEKEDEV VAQDGDDVEE  240
QKGEREEEME EEVQVEVQEK RGRGRPRKAD AEGNALQARV LRELGLRASQ YTNEERKKIV  300
SKYLSKRQSR PVSARPAKIA SRQALAERRK RGDGGRFLSS EGLTQPLERR SKRLEKQNLK  360
KEDKGESKED EIIEGEPDPE MEVVAGPGGE PKVGMVFLNE DKAYDCYVTY AGTVGFSVRK  420
GWLEKTATNT TKSRAYFCSK EGFRSKSVST DPKKPRPETR TGCLAHMTIK ITVSGKYVVT  480
EYVADHNHDL ETPLVDIQVL RSHKLLAKLQ QPPDPPRVVL IPNDYKNYVR TRHTKDMQLG  540
DTQAIYEYLQ RKKGEHPSFF YAIQVDEDDQ LTNVFWADVK SILDYHYFGD VLLEFELTLT  600
CMAYCCGEIG PISEYEVTVK NRPRDHFVRF DSSECMVVCS CKKFEFTGIP CCHVLKVLEV  660
RNIKELPPHY ILKRWRKDAQ SESPRENYGF EAVDEDPRFL LSKRYSMLYR TFYKIAAKAA  720
ENIEAYTYME SQCDQFIEQV ELLLQAKLHD KSSLSTILKV QQPNLFPNEA SNSETRRVSS  780
KKIKNVDTRR QQQSPLQSNK KKKGRQGLPD PEEAEVPLRV DPPTISNDIP NHLRTPTSQF  840
LATSHIMQAP YIAQQFGLSS LQGFPGISPF GQLQEPAPAP LQQSHLQQPP FHSGPQIPQV  900
IVITYTHVPF PRDFTFTDSI SNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	267	KRGRGRPRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.7401	0.0	callus\| leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37990083	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120460	0.0	AK120460.1 Oryza sativa Japonica Group cDNA clone:J013106N05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630920.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_015630921.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
TrEMBL	Q8S7I2	0.0	Q8S7I2_ORYSJ; Putative transposase
STRING	OB03G43000.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-30	FAR1-related sequence 5