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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA009622-PA | ||||||||
Common Name | OsI_13945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 27873.7 Da PI: 6.9662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.2e-11 | 144 | 191 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq BGIOSGA009622-PA 144 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 191 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.37E-10 | 138 | 195 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-18 | 138 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.221 | 140 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-18 | 140 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-8 | 144 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 146 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDPAPTLAAE LWRTPYLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE 60 APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSDNS SLRTEAETDS RNASKSGDQN 120 PPPPEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKASVL 180 DEIINYIQAL QRQVEFLSMK LEAVNAHVNN GIEAFPPKDF GAQVYNTAPG LTFDPQTPRE 240 YAQGSTPSEW LHMQIGGTYE RVT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.33544 | 0.0 | flower| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32948064 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100177 | 0.0 | AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629323.1 | 1e-155 | transcription factor BHLH089-like | ||||
Swissprot | Q84T08 | 1e-157 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A2XN14 | 0.0 | A2XN14_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA03G0344800.1 | 1e-161 | (Oryza glaberrima) | ||||
STRING | OBART03G37850.1 | 1e-161 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 7e-72 | BIG PETAL P |
Publications ? help Back to Top | |||
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