PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009474-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 383aa    MW: 41848.7 Da    PI: 6.9736
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009474-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.9e-2181501128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknr.atksgyWk 84 
                       l pG+ F+P+d+ l++ +L++k+++ ++e  + i+++d+y+++P +L         ++++ + wyfF++ + ++++  + r++r +  +++Wk
  BGIOSGA009474-PA   8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPAELVGehrpapGTHGSGSVWYFFCSPRYTSKRkaSGRRQRaVGGESVWK 99 
                       579************************999.89**************733567665556778******97655543113355552667999** PP

               NAM  85 atgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                       + g +k+v+ ++g+ vg  + + +        +g+a++ ++  W+m ey l
  BGIOSGA009474-PA 100 SEGGKKAVIGADGRRVGYLQKFSYGvyessssSGSARSFTRLGWCMTEYGL 150
                       ******************9999996667777668888889*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-336169IPR003441NAC domain
PROSITE profilePS5100530.4178169IPR003441NAC domain
PfamPF023657.0E-1310149IPR003441NAC domain
PfamPF139476.8E-7252330IPR025287Wall-associated receptor kinase, galacturonan-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0030247Molecular Functionpolysaccharide binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP AELVGEHRPA  60
PGTHGSGSVW YFFCSPRYTS KRKASGRRQR AVGGESVWKS EGGKKAVIGA DGRRVGYLQK  120
FSYGVYESSS SSGSARSFTR LGWCMTEYGL DDDATDGADK QVLCKVYRSP RAVCAEARTA  180
AAKCSGSKRK ADDGVDHPEA PPPSALPRQE EAGSEHDEQS SELLPEXGPG RAAVGADGRE  240
PGEHVQHGRH GTIHEGFELT CDTTSKPLKL FLGNTMTQVI SLYPSGTVLA SIMYTIPMIH  300
GVDTYNLSWD SPGRNLNVET YNYLAFLGCG IGVYLFHPDT GNLVGHCTIK CASMGEMHMA  360
NRRRDLQWHG LLHCHIPGVI SRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-14516914165NO APICAL MERISTEM PROTEIN
1ut4_B1e-14516914165NO APICAL MERISTEM PROTEIN
1ut7_A1e-14516914165NO APICAL MERISTEM PROTEIN
1ut7_B1e-14516914165NO APICAL MERISTEM PROTEIN
3swm_A2e-14516917168NAC domain-containing protein 19
3swm_B2e-14516917168NAC domain-containing protein 19
3swm_C2e-14516917168NAC domain-containing protein 19
3swm_D2e-14516917168NAC domain-containing protein 19
3swp_A2e-14516917168NAC domain-containing protein 19
3swp_B2e-14516917168NAC domain-containing protein 19
3swp_C2e-14516917168NAC domain-containing protein 19
3swp_D2e-14516917168NAC domain-containing protein 19
4dul_A1e-14516914165NAC domain-containing protein 19
4dul_B1e-14516914165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.493880.0callus| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379899020.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.11e-151NAC transcription factor NAM-2
TrEMBLA3APL01e-140A3APL0_ORYSJ; Uncharacterized protein
STRINGORGLA03G0372600.11e-138(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-16NAC family protein