PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009472-PA

Common Name

OsI_14261

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 316aa MW: 34209.9 Da PI: 4.6699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009472-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.1	1e-20	8	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknratk...... 79 l pG+ F+P+d+ lv+ +L++k+++ ++e + i+++d+y+++P +L ++++++ wyfF++ + ++++ + r++ra+ BGIOSGA009472-PA 8 LEPGYAFRPSDDGLVTLFLRPKIAKIPFEH-RLINHADVYSTDPAELVGehrpapGTHGSSRVWYFFCSPRYTSKRkaSGRRQRAVGgggggc 99 579**********************999.89**********733567665556778**9876665411446666644344333 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 + +Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ +W+m ey l BGIOSGA009472-PA 100 ENVWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARSFTRLRWCMTEYGL 154 567****************999999666777779999999*******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-32	6	173	IPR003441	NAC domain
PROSITE profile	PS51005	28.743	8	173	IPR003441	NAC domain
Pfam	PF02365	7.8E-13	10	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDDDEIALEP GYAFRPSDDG LVTLFLRPKI AKIPFEHRLI NHADVYSTDP AELVGEHRPA 60 PGTHGSSRVW YFFCSPRYTS KRKASGRRQR AVGGGGGGCE NVWKSEGGKK AVIGADGRRV 120 GYLQKFSYGV YESSSSGSAR SFTRLRWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE 180 ARTAAAKCSG SKRKADDGAD HPEAPPSARP RQEEAGSEHD EQPELPPELD LDALLSAPMD 240 ENLESTFSTA ATEQYMRYLM NDEPLPWAPT MDPVDGGAGG GDEFIQTANG PCMDGEVFAR 300 LAAGETLDDI LGSTSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-13	5	172	14	164	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-13	5	172	14	164	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-13	5	172	14	164	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-13	5	172	14	164	NO APICAL MERISTEM PROTEIN
3swm_A	4e-13	5	172	17	167	NAC domain-containing protein 19
3swm_B	4e-13	5	172	17	167	NAC domain-containing protein 19
3swm_C	4e-13	5	172	17	167	NAC domain-containing protein 19
3swm_D	4e-13	5	172	17	167	NAC domain-containing protein 19
3swp_A	4e-13	5	172	17	167	NAC domain-containing protein 19
3swp_B	4e-13	5	172	17	167	NAC domain-containing protein 19
3swp_C	4e-13	5	172	17	167	NAC domain-containing protein 19
3swp_D	4e-13	5	172	17	167	NAC domain-containing protein 19
4dul_A	4e-13	5	172	14	164	NAC domain-containing protein 19
4dul_B	4e-13	5	172	14	164	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629679.1	0.0	NAC transcription factor NAM-2
TrEMBL	B8AN71	0.0	B8AN71_ORYSI; Uncharacterized protein
STRING	ONIVA03G42340.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-13	NAC family protein