PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008903-PA
Common NameOsI_08651
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 299aa    MW: 30807.5 Da    PI: 5.2039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008903-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09212253955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  BGIOSGA008903-PA 212 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 253
                       69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11204261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13205263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-12205257No hitNo description
SMARTSM003532.0E-11209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6212253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALVRERAMV YGGGFDAEAF GGGFESSQMG YGHDALLDID AAALFGGYEA AASAGCALVQ  60
DGAAGWAGAG ASSSVLAFDR AAQAEEAECD AWIEAMDQSY GAGGEAAPYR STTTVAFDAA  120
TGCFSLTERA TGGGGGEGGR QFGLLFPSTS GGGVSPERAA PAPAPRGSQK RAHAESSQAM  180
SPSKKQCGAG RKAGKAKSVP TTPTKDPQSL AAKNRRERIS ERLRILQELV PNGTKVDLVT  240
MLEKAISYVK FLQLQVKVLA TDEFWPAQGG KAPEISQVKE ALDAILSSSS SPLMGQLMN
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948710.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096620.0AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624282.10.0putative transcription factor bHLH086
TrEMBLA0A0E0GC090.0A0A0E0GC09_ORYNI; Uncharacterized protein
TrEMBLA2X8T90.0A2X8T9_ORYSI; Uncharacterized protein
STRINGONIVA02G32560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-43ROOT HAIR DEFECTIVE6