PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 503aa MW: 51231.8 Da PI: 6.3464

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA008866-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.6e-31	232	290	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ BGIOSGA008866-PA 232 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 290 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-31	226	292	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	226	292	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	229	292	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	231	291	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	233	290	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MEGEQAAGDL ADIVLRAGGA AAAAVAGGGI PSTEWQLPPA EEEEEEPGLF PLPPSSSDGS 60 GMSGADAFGD PFAGLPDPFG GDYPSSSGGA AAAADFFDAV VAKAGFVDVG VLGGGGGGGC 120 DGGGVDGGGG GSSLLGMSKP ILPRAAMQLP SVSPRAIRPY PVMAGDTVKL GAPMAGGPCA 180 FDGAAAAGLH MSSSPRGAVG GIKRRKNQAR KVVCIPAPAA AGGRTSGEVV PSDLWAWRKY 240 GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG 300 STRSHHAKNS SSNSSSSGAS SASKNNSSHR GYHHHHHHQK PLVKAEPNDQ SAAAAATTTA 360 ATVPVKEEAA MVGTSSEALA KTTQKSMDDA AAAASATAAA VEHSDLMQQM FSQSYRPMIP 420 EAAAGGHHDD FFADLAELES DPMSLIFSKE YMATNYKPAG DPAGKEMNAV DKGLDPAYML 480 DWSSTTVVTR AGGSSFMQGE GGL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MEGEQAAGDL ADIVLRAGGA AAAAVAGGGI PSTEWQLPPA EEEEEEPGLF PLPPSSSDGS  60
GMSGADAFGD PFAGLPDPFG GDYPSSSGGA AAAADFFDAV VAKAGFVDVG VLGGGGGGGC  120
DGGGVDGGGG GSSLLGMSKP ILPRAAMQLP SVSPRAIRPY PVMAGDTVKL GAPMAGGPCA  180
FDGAAAAGLH MSSSPRGAVG GIKRRKNQAR KVVCIPAPAA AGGRTSGEVV PSDLWAWRKY  240
GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG  300
STRSHHAKNS SSNSSSSGAS SASKNNSSHR GYHHHHHHQK PLVKAEPNDQ SAAAAATTTA  360
ATVPVKEEAA MVGTSSEALA KTTQKSMDDA AAAASATAAA VEHSDLMQQM FSQSYRPMIP  420
EAAAGGHHDD FFADLAELES DPMSLIFSKE YMATNYKPAG DPAGKEMNAV DKGLDPAYML  480
DWSSTTVVTR AGGSSFMQGE GGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	206	293	2	80	Disease resistance protein RRS1
5w3x_D	4e-25	206	293	2	80	Disease resistance protein RRS1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32983123	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073100	0.0	AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624748.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	6e-69	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	Q6IEL5	0.0	Q6IEL5_ORYSI; WRKY transcription factor 66
STRING	OGLUM02G29590.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	8e-66	WRKY DNA-binding protein 35

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]