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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA008492-PA | ||||||||
Common Name | OsI_07798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 38578.5 Da PI: 6.841 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 22 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +k+++ +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e++ BGIOSGA008492-PA 22 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIF 114 79*********************9999666689***************988899*************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++lvg+kktLvfy+grap+g kt Wvmheyr+ BGIOSGA008492-PA 115 R-GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 148 *.99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-64 | 10 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 22 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-29 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MENDVHHHRQ MMQQQQQQEM DLPPGFRFHP TDEELITHYL LRKAADPAGF AARAVGEADL 60 NKCEPWDLPS RATMGEKEWY FFCVKDRKYP TGLRTNRATE SGYWKATGKD REIFRGKALV 120 GMKKTLVFYT GRAPRGGKTG WVMHEYRIHG KHAAANSKDQ EWVLCRVFKK SLELAPAAAA 180 AVGRRGAGAG TDVGPSSMPM ADDVVGLAPC ALPPLMDVSG GGGGAGTASL SATAGAAAAP 240 PPAHVTCFSN ALEGQFLDTP YLLPAAEPAD HLAMSSASPF LEALQMQYVQ DAAAAGGAGM 300 VHELLMGGGW YFNKGERERL SGASQDTGLT SSEVNPGEIS SSSRQQRMDH HDASLWAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-55 | 8 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 8 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 8 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 8 | 170 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 19 | 170 | 17 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 8 | 170 | 3 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 8 | 170 | 3 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9492 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116636433 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834765 | 0.0 | CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623390.1 | 0.0 | NAC domain-containing protein 92 isoform X2 | ||||
Swissprot | Q9FLJ2 | 2e-88 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | B8AED2 | 0.0 | B8AED2_ORYSI; Uncharacterized protein | ||||
STRING | OBART02G21850.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-84 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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