PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008400-PA
Common NameOsI_07599
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 218aa    MW: 23800.8 Da    PI: 5.0962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008400-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-0892117735
                       HHHHHHHHHHHHHHHHHHCTSCCC...TT CS
               HLH   7 erErrRRdriNsafeeLrellPkaskaps 35 
                        rEr RR+r+N+ f+ +r+l+P++   p 
  BGIOSGA008400-PA  92 VRERERRRRMNDMFAGIRRLVPNL---PE 117
                       59*********************7...44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-783117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-591120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-593117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGAESDGDD DDVVIVDACN NGKRKVGDGE  60
EEGRGSQGGD DDDDDVVAVH GGGGNRACMF AVRERERRRR MNDMFAGIRR LVPNLPEKTW  120
SWSDNVVVSV LGNIGNMTVR APLCRTGVLA MASAALKRYN ITAVTSLSGT DASRTQNMFM  180
FYTIIDMPDR QPQFVHPKVF EAMYRAAAAE IAAWINCY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.813970.0seed
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624470.25e-57uncharacterized protein LOC107276567 isoform X1
RefseqXP_025878834.14e-57uncharacterized protein LOC107276567 isoform X2
TrEMBLA2X5W81e-161A2X5W8_ORYSI; Uncharacterized protein
STRINGOBART02G19960.11e-114(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1814277