PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007986-PA
Common NameOsI_06790
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 556aa    MW: 59336.4 Da    PI: 9.4927
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007986-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.12.4e-13181270798
            DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                       w+ +De+ +L  l+   +++g++    +++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  BGIOSGA007986-PA 181 WTTDDEVKILEVLVAHFKSHGTQ--LKVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 270
                       ***************99999965..5799**********98865538***********************9965.567889**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-19181269IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEEEEER ESPVAPPPQK PKRPRRRLLR  60
KVGGGDEEGE EVEGDSSESE PEPEPVKKES AKKAKAEAKK KRAAPEPAPS GKAKKAKPEK  120
SSSAAAPEPA PSSGKSKKAA KAEAAKAAAA EPAPSTGKVS KYNLAPEPSP SSKSGKALSR  180
WTTDDEVKIL EVLVAHFKSH GTQLKVEGII AAVGDSLERK SIKYSDMYEK VRRLKQRYEA  240
TAKKVEHGGD LPAKEDDLRM YQLSSEIWGK NAKDAGNSSK NKKGQAKKDK VSGDSKEAAK  300
EDKVDEAAIA VNEKGGTLAE NKKGKTNKQK TGMETKVGSS KEAALAASPT KGKKKGSHKD  360
KLDEEAKSGT AKVTSTIATD DDDGTLGGSK REKAGKEELD GDTHIVMPKE ATTTAASDDG  420
TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG ENHKEKVDKD ANVPSIRREY  480
AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC TLESKIKKQK IAEVRMQLRL  540
ADTKKEVANA LLGLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15057PKRPRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.65980.0callus| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329880950.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041680.0AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0neurofilament medium polypeptide
TrEMBLB8AFP00.0B8AFP0_ORYSI; Uncharacterized protein
STRINGOS02T0288200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737