PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA007838-PA | ||||||||
Common Name | OsI_06464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 301aa MW: 32156.8 Da PI: 6.3155 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.5 | 2.1e-33 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F+ k+y++++d++++ +i w +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ll BGIOSGA007838-PA 16 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLL 99 9****************************************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i r++s BGIOSGA007838-PA 100 RRIVRRSS 107 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.9E-37 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.52E-33 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.6E-52 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.9E-29 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-17 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-17 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-17 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MTTTTTAEGG GGVAPFVAKT YRMVDDPATD GVIAWGRDSN SFVVADPFAF SQTLLPAHFK 60 HSNFSSFVRQ LNTYGFRKVD PDRWEFAHVS FLRGQTHLLR RIVRRSSGGG GAKRKEEAGG 120 CGGGGEAAAG DVDEESAVVA MEVARLRREQ REIEGRVAAM WRRVQETERR PKQMLAFLVK 180 VVGDPQVLRR LVDRDNTNAA PAASNADDAA VHHQVKRPRL LLDSSSTTTT HGDRHLVTAA 240 ADGFYAGGCG PEAAAAAAFV PDDALDFTGL YTGGDGFGNA VVDAGVDDPP AYAFPVVDSG 300 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 7 | 105 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 7 | 105 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 7 | 105 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11250 | 0.0 | callus| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991697 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106488 | 0.0 | AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623571.1 | 1e-180 | heat stress transcription factor C-2a | ||||
Swissprot | Q6EUG4 | 0.0 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | A0A0E0G3Z2 | 0.0 | A0A0E0G3Z2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2X2Q3 | 0.0 | A2X2Q3_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G10840.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-55 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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