PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GATA

Protein Properties

Length: 290aa MW: 30963.2 Da PI: 4.8081

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA007539-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.3	7.7e-17	198	235	1	36
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ kg++ BGIOSGA007539-PA 198 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 235 ***88888***********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06203	4.6E-16	123	165	IPR010402	CCT domain
PROSITE profile	PS51017	13.384	123	165	IPR010402	CCT domain
PROSITE profile	PS50114	9.249	192	240	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.2E-12	192	245	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.28E-12	196	248	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-15	197	238	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.53E-14	197	241	No hit	No description
Pfam	PF00320	1.0E-14	198	235	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	198	225	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE 60 YEGGEGVPMD ADASAAAVAG MDPHGEMVQA VLLLLGGREL APGSGSVPSS SAAYSKKMNF 120 PHRMASLMRF REKRKERNFD KKIRYTVRKE VALRMQRNRG QFTSSKSKAE EATSAITSSE 180 GSPNWGAVEG RPPSAAECHH CGISAASTPM MRRGPDGPRT LCNACGLMWA NKGTMREVTK 240 GPPVPLQIVP AATNDVQNGI VEATGVEQHN SAVEEAVSAA NGHESQSGVA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.6390	0.0	callus\| flower\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32978955	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought and salt stresses. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068931	0.0	AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBank	EU847015	0.0	EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622990.1	1e-146	GATA transcription factor 17 isoform X1
Swissprot	Q6Z433	1e-147	GAT17_ORYSJ; GATA transcription factor 17
TrEMBL	A2X0W9	0.0	A2X0W9_ORYSI; Uncharacterized protein
STRING	OPUNC02G02970.1	1e-148	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4325	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	1e-53	ZIM-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]