PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007458-PA
Common NameOsI_05709
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family BES1
Protein Properties Length: 565aa    MW: 63552.6 Da    PI: 5.3172
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007458-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82276.39.5e-24110647142
            DUF822  47 nneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa... 133
                       +n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+e+++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++   
  BGIOSGA007458-PA   1 MNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVETPSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsik 93 
                       7****************************998999**************99899*********************************998776 PP

            DUF822 134 ....asllpvlsv 142
                            ++ +v+s 
  BGIOSGA007458-PA  94 nekyGNSDSVSSL 106
                       6665444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.2E-211109IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.11E-169127559IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.5E-172127560IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.3E-81152517IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50165179IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50186204IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50299321IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50372391IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50406422IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50423434IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50441464IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-50479501IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MNDVLAALAR AAGWTVHPDG TTFRASSQPL HPPTPQSPGI FHVNSVETPS FTSVLNSYAI  60
GTPLDSQASM LQTDDSLSPS SLDSVVVADQ SIKNEKYGNS DSVSSLNCLE NHQLTRASAA  120
LAGDYTRTPY IPVYASLPMG IINSHCQLID PEGIRAELMH LKSLNVDGVI VDCWWGIVEA  180
WIPHKYEWSG YRDLFGIIKE FKLKVQVVLS FHGSGETGSG GVSLPKWVME IAQENQDVFF  240
TDREGRRNME CLSWGIDKER VLRGRTGIEA YFDFMRSFHM EFRNLTEEGL ISAIEIGLGV  300
SGELKYPSCP ERMGWRYPGI GEFQCYDRYM QKNLRQAALS RGHLFWARGP DNAGYYNSRP  360
HETGFFCDGG DYDSYYGRFF LNWYSGILID HVDQVLSLAT LAFDGVETVV KIPSIYWWYR  420
TASHAAELTA GFYNPTNRDG YSPVFRMLKK HSVILKFVCY GPEFTIQENN EAFADPEGLT  480
WQVMNAAWDH GLSISVESAL PCLDGEMYSQ ILDTAKPRHD PDRHHVSFFA YRQLPSFLLQ  540
RDVCFSELGN FVKCMHGEAT QIVEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12513055811444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.494270.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379896720.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA2X0H40.0A2X0H4_ORYSI; Beta-amylase
STRINGOBART02G02330.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]