PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA006943-PA

Common Name

OsI_06245

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 289aa MW: 31817.6 Da PI: 9.4189

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA006943-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.4e-17	21	112	9	98
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++ l lp +fa+e +g+++e ++ +l r W+vk+ +g+ +l++GW +F++a+gL++gD +vF++dg f +v+ BGIOSGA006943-PA 21 PGSSRTKLKLPDEFARELEGEERELRDAKLLVAGVgrrrrgRMWDVKV--VADDGGAYLGRGWLRFARAHGLRDGDLLVFRYDGAAAF--TVT 109 44556669********88888777777654222334444***..999999************************998888..888 PP EE- CS B3 96 vfr 98 vf+ BGIOSGA006943-PA 110 VFD 112 887 PP
2	B3	50.9	2.8e-16	187	257	17	86
E--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +p +f e+hg+ +e +++ +grsW+v+l++ r +++r vl+ GW +F+ +ngL +gD++ F+ + BGIOSGA006943-PA 187 NVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 257 57999***998665..455.45599***998887777788**********************9554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-20	12	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-18	12	112	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.143	13	114	IPR003340	B3 DNA binding domain
CDD	cd10017	6.22E-13	13	112	No hit	No description
SMART	SM01019	1.7E-12	15	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-14	22	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-24	145	283	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0014	148	283	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.041	188	283	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-13	188	257	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-14	188	257	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.82E-12	188	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR 60 GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA 120 YHDAAGSGSS SDDDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA 180 AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC 240 ADNGLAVGDT CFFRALRSAG SGAGDVDDGD GDHVLSVTVH KADGGDPLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	RPRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628624.1	7e-95	B3 domain-containing protein Os03g0212300
Swissprot	Q10Q26	6e-96	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A2X220	0.0	A2X220_ORYSI; Uncharacterized protein
STRING	OBART02G07450.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24645.1	4e-14	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]