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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA006833-PA | ||||||||
Common Name | OsI_06458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 19231.4 Da PI: 9.8166 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.2 | 5.1e-07 | 19 | 71 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55 + Er RR+++N+ ++ L +l+ +a+ ++ + + + L A eYI++ q BGIOSGA006833-PA 19 RKTTERIRREQMNKLYSDLDSLVGSAPptGGAAAATTRPDRLGVAAEYIRQTQ 71 6789*********************5556666666999************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-6 | 17 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-8 | 17 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDIPPPSAGG GGGGGKTDRK TTERIRREQM NKLYSDLDSL VGSAPPTGGA AAATTRPDRL 60 GVAAEYIRQT QERVDMLREK KRELTGGGGG GSSSSSGAGA ATAAAPEVEV QHLGSGLHAI 120 LFTGPPPTDG ASFHRAIRAV GDAGGQVQNA HFSVAGAKAV YTIHAMIGDG YGGIERVVQR 180 LKEAIRSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688523.1 | 7e-70 | PREDICTED: uncharacterized protein LOC107303503 | ||||
TrEMBL | A2X2P6 | 1e-130 | A2X2P6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G10570.1 | 1e-128 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-14 | bHLH family protein |