![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA006438-PA | ||||||||
Common Name | OsI_07290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 475aa MW: 52785.5 Da PI: 5.0904 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.4 | 2.6e-34 | 22 | 113 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+ye+++d++++ ++sws ++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF++++F kg+k+l BGIOSGA006438-PA 22 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFIKGQKHL 105 9********************66679****************************************999.........*************** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++i+r+k BGIOSGA006438-PA 106 LKNIHRRK 113 ******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.44E-33 | 18 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.6E-36 | 18 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.3E-59 | 18 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.1E-30 | 22 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.7E-19 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.7E-19 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.7E-19 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR 60 LLPAYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEYFIK GQKHLLKNIH RRKPIHSHSH 120 PPGALPDNER AIFEDEIERL SREKSNLQAD LWKSKQQQSG TMNQIEDLER RVLGMEQRQT 180 KMIAFLQQAS KNPQFVNKLV KMAEASSIFT DAFNKKRRLP GLDYSIENTE TTSFYDDHSS 240 TSKQETGNLL NQHFSDKLRL GLCPAMTESN IITLSTQSSN EDNGSPHGKH PECDMMGREC 300 LPLVPQMMEL SDTGTSICPS KSSCFAPPIS DEGLLTCHLS LTLASCSMDV DKSQGLNANG 360 TTIDNPTEAA TATMEKDDTI DRSFDDNQKK SADSRTADAT TPRADARVAS EAPAAPAAVV 420 NDKFWEQFLT ERPGCSETEE ASSGLRTDTS REQMENRQAY DHSRNDREDV EQLKL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 9 | 112 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 9 | 112 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 9 | 112 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.59230 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32982233 | 0.0 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK065643 | 0.0 | AK065643.1 Oryza sativa Japonica Group cDNA clone:J013035J03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622576.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q6K6S5 | 0.0 | HSFA5_ORYSJ; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A0E0G6U3 | 0.0 | A0A0E0G6U3_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2X520 | 0.0 | A2X520_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G18700.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9000 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-108 | HSF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|