PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005852-PA
Common NameOsI_08446
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 804aa    MW: 86077.3 Da    PI: 5.4935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005852-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.3e-2199154156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe+lF+++++p++++r+eL+++l+L+ rqVk+WFqNrR+++k
  BGIOSGA005852-PA  99 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMK 154
                       678899***********************************************999 PP
2START187.18.9e-593145461206
                       HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S.... CS
             START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla.... 77 
                       ela +a++elvk+a+ ++p+Wv         e +n +e+l +f +  +     + +ea+r+sg+v+ +    lve+l+d + +W+ ++     
  BGIOSGA005852-PA 314 ELAISAMDELVKMAQMDDPLWVPALpgspskEVLNFEEYLHSFLPCIGmkpagYVSEASRESGLVIIDNSlALVETLMDER-RWSDMFScmia 405
                       57889*****************99978888888888888888888877*****************9876658999999999.*********** PP

                       EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEEC CS
             START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepks 158
                       ka++le +s+g      gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d  ++++++    + + v++++ pSg+++++++
  BGIOSGA005852-PA 406 KATVLEEVSTGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDHNSGtapTGGNVKCRRVPSGCVMQDTP 498
                       ************************************************************96556666667678899**************** PP

                       TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       ng++kvtwveh++++++++h+l+r+l++sgla+ga++w+atlqrqce+
  BGIOSGA005852-PA 499 NGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCEC 546
                       **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-2283150IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2189156IPR009057Homeodomain-like
PROSITE profilePS5007118.12396156IPR001356Homeobox domain
SMARTSM003891.5E-1997160IPR001356Homeobox domain
CDDcd000865.35E-1998156No hitNo description
PfamPF000469.5E-1999154IPR001356Homeobox domain
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084845.039305549IPR002913START domain
SuperFamilySSF559612.91E-32308546No hitNo description
CDDcd088751.23E-113309545No hitNo description
SMARTSM002341.5E-47314546IPR002913START domain
PfamPF018523.7E-51315546IPR002913START domain
SuperFamilySSF559613.41E-21567770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MSFGGLFDGG GGGGMQFPFA SGFASSPALS LALDNAGGGI GGRMLGGGTG AGSSAGGAMT  60
RDTEAENDSR SGSDHLDAIS AAGEDDVEDA EPSNSRKRKK RYHRHTPQQI QELEALFKEC  120
PHPDEKQRAE LSRRLSLDAR QVKFWFQNRR TQMKTQLERH ENALLKQEND KLRAENMTIR  180
EAMRSPMCGS CGSPAMLGEV SLEEQHLRIE NARLKDELNR VCALATKFLG KPISLLSPPP  240
LLQPHLSLPM PNSSLELAIG GIGGLGSLGT LPGCMNEFAG GVSSPMGTVI TPARATGAAI  300
PSLVGNIDRS VFLELAISAM DELVKMAQMD DPLWVPALPG SPSKEVLNFE EYLHSFLPCI  360
GMKPAGYVSE ASRESGLVII DNSLALVETL MDERRWSDMF SCMIAKATVL EEVSTGIAGS  420
RNGALLLMKA ELQVLSPLVP IREVTFLRFC KQLAEGAWAV VDVSIDGLVR DHNSGTAPTG  480
GNVKCRRVPS GCVMQDTPNG YCKVTWVEHT EYDEASVHQL YRPLLRSGLA FGARRWLATL  540
QRQCECLAIL MSSATVTAND STAISQEGKR SMLKLARRMT ENFCAGVSAS SAREWSKLDG  600
ATGSIGEDVR VMARKSVSEP GEPPGVVLSA ATSVWVPVAP EKLFNFLRDE QLRAEWDILS  660
NGGPMQEMTQ IAKGQRDGNS VSLLRASAVS ANQSSMLILQ ETCTDASGSI VVYAPVDIPA  720
MQLVMNGGDS TYVALLPSGF AILPDGPRIG ATGYETGGSL LTVAFQILVN NQPTAKLTVE  780
SVETVNNLIS CTIKKIKTAL QCDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14047GGRMLGGG
29599RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.60390.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882070.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016480.0AB101648.1 Oryza sativa Japonica Group Roc5 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625616.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A0E0GB770.0A0A0E0GB77_ORYNI; Uncharacterized protein
TrEMBLB8AGG20.0B8AGG2_ORYSI; Uncharacterized protein
STRINGONIVA02G30520.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]