PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005835-PA
Common NameOsI_08488
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 411aa    MW: 43873.8 Da    PI: 8.1305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005835-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.53.6e-3095186187
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                       f+kv tpsdv+k++rlv+pk++ae++       +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  BGIOSGA005835-PA  95 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGiGD 186
                       89***************************955556888************************************************944243 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4189202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2992200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-2593182No hitNo description
SMARTSM010196.8E-2195201IPR003340B3 DNA binding domain
PROSITE profilePS5086314.7295199IPR003340B3 DNA binding domain
PfamPF023621.6E-2795188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS  60
GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY  120
FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF  180
SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP  240
PATLYEHRLR QGLDFRAFNP AAAMGRQVLL FGSARIPPQA PLLARAPSPL HHHYTLQPSG  300
DGVRAAGSPV VLDSVPVIES PTTAAKRVRL FGVNLDNPHA GGGGAAAAGE SSNHGNALSL  360
QTPAWMRRDP TLRLLELPPH HHHGAESSAA SSPSSSSSSK RDAHSALDLD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-62882001113B3 domain-containing transcription factor NGA1
5os9_B9e-62882001113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329951170.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ8320750.0KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624169.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU300.0Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA2X8D10.0A2X8D1_ORYSI; Uncharacterized protein
STRINGORGLA02G0241100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.19e-66B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]