PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005697-PA
Common NameOsI_08775
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 443aa    MW: 48815.4 Da    PI: 8.9651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005697-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.6e-17191240255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  BGIOSGA005697-PA 191 RSKHSATEQRRRTKINDRLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 240
                       889*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-18187249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-22188252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.768189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-15191244No hitNo description
SMARTSM003532.3E-12195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSTSSPPFQH REEQHSSHSS RGYGMEIRRS LRPLELAKQR  60
GRSSGNGTAA GSAVDGASPA GSDSEEHVLP GGVGTFSIRH ASGTPSREEA GSHGGVRRSA  120
FAFAPALHGA RMENAHETGG RSGSRAHRAP STMWQDSAID QRSIGQTPYE ATRAEGKSSA  180
SSADQGPSTP RSKHSATEQR RRTKINDRLE ILRELLPHTD QKRDKASFLS EVIEYIRFLQ  240
EKVQKYEEAD PERNHEDSKS MPWAKVYYRS CWRNTKNTSQ VQGEDLSPST QDMNNEQYGP  300
KHISAAQPAL FNTQSVTSTT TSSSHMATGT PQNLEKNSTP SNQPPWLSMS TMRQESEPGN  360
KMPNKHEKQT LHDENHSISS AYSQGLFNRL TEALKKSGLD PSQANIAVEI NLAKRARDNT  420
SDNSKINEDE EPIQITKRRC NKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.525920.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329782460.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.10.0transcription factor BIM2
RefseqXP_015627559.10.0transcription factor BIM2
RefseqXP_015627560.10.0transcription factor BIM2
TrEMBLB8AHQ60.0B8AHQ6_ORYSI; Uncharacterized protein
STRINGONIVA02G34070.40.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.31e-37bHLH family protein