PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA005542-PA | ||||||||
Common Name | OsI_09077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 22820.1 Da PI: 4.5569 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g BGIOSGA005542-PA 33 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 82 6*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-30 | 32 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.87E-17 | 33 | 90 | No hit | No description |
Pfam | PF00847 | 4.6E-11 | 33 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-19 | 33 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-33 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.575 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVKSGQEAAP GSGGNAAAAA ARQGGGGGGR GRQYKGVRMR SWGSWVSEIR APNQKTRIWL 60 GSYSTAEAAA RAYDAALLCL KGSAADLNFP RVAAAAAANA TSPLQHHSGA ASFATATGGY 120 NPAAAPTTPP CSYGDMSSCS AVSSPETANY YGADHDMVAR EDDVDYAALA DIDAFFQSPK 180 CMDYSMMDPC STFFSPAPES LAAEWEDEGE ISLWSFSSLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 30 | 90 | 2 | 63 | ATERF1 |
3gcc_A | 4e-14 | 30 | 90 | 2 | 63 | ATERF1 |
5wx9_A | 5e-14 | 23 | 90 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878708.1 | 1e-120 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | B8AJ48 | 1e-158 | B8AJ48_ORYSI; Uncharacterized protein | ||||
STRING | OS02T0767800-00 | 1e-119 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 6e-25 | ERF family protein |