PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005267-PA
Common NameOsI_05398
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 412aa    MW: 45424.3 Da    PI: 4.747
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005267-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31162218258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h
  BGIOSGA005267-PA 162 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 218
                       8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.164156221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28158219IPR003657WRKY domain
SuperFamilySSF1182903.66E-26160219IPR003657WRKY domain
SMARTSM007747.5E-36161220IPR003657WRKY domain
PfamPF031065.4E-25162218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEGAMQESRE YWRDGGDVVG EELLREILDE IAAVHSNSNS NFNSNSNSNS KEAEEEDERE  60
YFAAAAADEQ LQVEAPCGRR RRESMVNKLI STVYSGPTIS DIESALSFTA AGDHQLLADG  120
HNFAASSCSP VVFSPEKTLS KTMENKYKLK MKSCGNNGGL ADDGYKWRKY GQKSIKNSPN  180
PRSYYRCTNP RCNAKKQVER AVDEPDTLIV TYEGLHLHYT YSHFLHSTSS SSSSTTTQQQ  240
LQPQPQMMTN CKKKPKLHLH PLLHDDPPPP PPPPEMTTMM IMQSFSIQQQ QHDDDQLLQP  300
AADDHLMVQA PPDDCYNING SSSSGLMMSL DDDEQAAGAG GLLEDVVPLL VRRPPPPICN  360
NNNYYYSPAT TCTSDNEYGS SASASPSSSV SVSSWTTPMS PCIDMAILSN IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-191602181674Probable WRKY transcription factor 4
2lex_A4e-191602181674Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335191710.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106250.0AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence.
GenBankAY3418420.0AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds.
GenBankAY8706050.0AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641374.10.0probable WRKY transcription factor 49
TrEMBLB8A9X20.0B8A9X2_ORYSI; Uncharacterized protein
STRINGONIVA01G51790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-40WRKY DNA-binding protein 49