PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005161-PA
Common NameOsI_05188
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 376aa    MW: 41300.2 Da    PI: 6.8444
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005161-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.65.6e-118737124374
              GRAS  24 LarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                       L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l+++  +aNq Ilea+e+e+ vH+i
  BGIOSGA005161-PA   7 LEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRASP--TPAEVAAARRHFLDLCPFLRLAGAAANQSILEAMESEKIVHVI 97 
                       89999***********************************94444444..6899999************************************ PP

              GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                       D++    +QW+ Ll+ La+Rpegpp+lR+T v++    +ke l +t+  L+k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gEala++++l
  BGIOSGA005161-PA  98 DLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VVSRLDALDVESLRVKTGEALAICSSL 185
                       **********************************....9**************************.7************************** PP

              GRAS 209 qlhrll....................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       qlh ll                    +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+eal+yy+alfd+le++++r s e
  BGIOSGA005161-PA 186 QLHCLLasdddaaavaggdkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVAEQEASHNAAGLTERFVEALNYYAALFDCLEVGAARGSVE 278
                       *********************9997522233344789******************************************************** PP

              GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r+ vEr llg+ei+n+vac g errerhe+le+W +rle aGF+ vpls++a  qa+++ +  + dg++v ee+g ++l+W+dr+L+svSaWr
  BGIOSGA005161-PA 279 RARVERWLLGEEIKNIVACDGGERRERHERLERWARRLEGAGFGRVPLSYYALLQARRVAQGLGCDGFKVREEKGNFFLCWQDRALFSVSAWR 371
                       ********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.4791351IPR005202Transcription factor GRAS
PfamPF035142.0E-1157371IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLRTPQLEHI ASLAAPDGDA MQRVAAAFAE ALARRALRAW PGLCRALLLP RASPTPAEVA  60
AARRHFLDLC PFLRLAGAAA NQSILEAMES EKIVHVIDLG GADATQWLEL LHLLAARPEG  120
PPHLRLTSVH EHKELLTQTA MALTKEAERL DVPFQFNPVV SRLDALDVES LRVKTGEALA  180
ICSSLQLHCL LASDDDAAAV AGGDKERRSP ESGLSPSTSR ADAFLGALWG LSPKVMVVAE  240
QEASHNAAGL TERFVEALNY YAALFDCLEV GAARGSVERA RVERWLLGEE IKNIVACDGG  300
ERRERHERLE RWARRLEGAG FGRVPLSYYA LLQARRVAQG LGCDGFKVRE EKGNFFLCWQ  360
DRALFSVSAW RGRRFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-59737342381Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.589820.0callus| flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610769.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR81e-147SCL3_ARATH; Scarecrow-like protein 3
TrEMBLB8A9550.0B8A955_ORYSI; Uncharacterized protein
STRINGOGLUM01G48120.40.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-121scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]