PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HB-other

Protein Properties

Length: 1227aa MW: 134696 Da PI: 9.0834

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA005119-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.2	4.8e-07	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+++ ++ ++e +e++++ g+t +qV+ +F +R++ +k BGIOSGA005119-PA 74 KKPRDLLNPKAVKSMQSLFAMKDTIGKKETREISASFGVTVTQVREFFASQRTRVRK 130 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.847	71	131	IPR001356	Homeobox domain
SMART	SM00389	5.6E-4	73	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.2E-5	74	138	IPR009057	Homeodomain-like
CDD	cd00086	4.14E-4	74	130	No hit	No description
Pfam	PF00046	1.5E-4	74	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-6	74	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1227 aa Download sequence Send to blast
MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF 120 FASQRTRVRK LVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEAHAQVI EPLRTLEPLE 180 AQQISLPHLV VPQISLQLPV VPQSCAIPVA PIGVMQPTEA KTNPDPIQKE TKQEEVAGVE 240 SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT 300 EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSNAR NLLSRLSKVL 360 VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL 420 TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA 480 KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS 540 TSKQSTLSPP DKPEIAVSLK LNVTAKENFI EKLDSKRVIW HIPPAWNKHP AIKLLEEQGM 600 AIFCSDMRIE KLPVIPHKQT WGSYYHNFRQ FIATVPLFVG RLAKVWIDPA WSLGAGENSK 660 EFEVQTQRNR REKETFYASL KDIPLNPKGP WDVEMDFDDS LTPEIPIEQP PDADAMETDS 720 VSTAPPNIVV PVVDKQIGST SSVSPAVAAG ANGAASEPDL ELLAVLLKNP QLVFALTSNQ 780 GGTLPSEQTV ALLDMLKQTG LGLSELVNSL ANNSGVQKEP ESGPEAIPAS LPSPTPPKDL 840 IARDGWSSEF PSQVRTQNLQ HAHLPNRANA PPVASSVQQS FSNVVSSLPS QPYASASALP 900 AQTRTNMTSL PQSVISVNPS TQHVAPMNNL LSRATVHQHT QSYALTSDPA AVAVHHQPAV 960 NKLAHEVQSI SHPAVSHSSV AESHASYTSY TWQSSVATIA ATGRNATPDR WAAPARTTNS 1020 FNAAPSNSNH VTYPNQNAYS NHSTQATTYN SYGSAPVSSH SLHPGQGLDR NGYTHAAEYQ 1080 TTTARDALRR NSRSPELGAG AVYGSSSQGY VPEPSRQWNY GQQSYNPEPS SRQWSSGQQS 1140 YNTVTAEPSR QWSSGQQSYS NPPEPSRQWS SSAHAQPSYN PEPSRPWNSG HQSQNPEASR 1200 QWSHHHGKQE RYNPTDGRNS YDQHWRR

Sequence ? help Back to Top

Protein Sequence Length: 1227 aa Download sequence Send to blast

MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF  120
FASQRTRVRK LVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEAHAQVI EPLRTLEPLE  180
AQQISLPHLV VPQISLQLPV VPQSCAIPVA PIGVMQPTEA KTNPDPIQKE TKQEEVAGVE  240
SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT  300
EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSNAR NLLSRLSKVL  360
VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL  420
TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA  480
KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS  540
TSKQSTLSPP DKPEIAVSLK LNVTAKENFI EKLDSKRVIW HIPPAWNKHP AIKLLEEQGM  600
AIFCSDMRIE KLPVIPHKQT WGSYYHNFRQ FIATVPLFVG RLAKVWIDPA WSLGAGENSK  660
EFEVQTQRNR REKETFYASL KDIPLNPKGP WDVEMDFDDS LTPEIPIEQP PDADAMETDS  720
VSTAPPNIVV PVVDKQIGST SSVSPAVAAG ANGAASEPDL ELLAVLLKNP QLVFALTSNQ  780
GGTLPSEQTV ALLDMLKQTG LGLSELVNSL ANNSGVQKEP ESGPEAIPAS LPSPTPPKDL  840
IARDGWSSEF PSQVRTQNLQ HAHLPNRANA PPVASSVQQS FSNVVSSLPS QPYASASALP  900
AQTRTNMTSL PQSVISVNPS TQHVAPMNNL LSRATVHQHT QSYALTSDPA AVAVHHQPAV  960
NKLAHEVQSI SHPAVSHSSV AESHASYTSY TWQSSVATIA ATGRNATPDR WAAPARTTNS  1020
FNAAPSNSNH VTYPNQNAYS NHSTQATTYN SYGSAPVSSH SLHPGQGLDR NGYTHAAEYQ  1080
TTTARDALRR NSRSPELGAG AVYGSSSQGY VPEPSRQWNY GQQSYNPEPS SRQWSSGQQS  1140
YNTVTAEPSR QWSSGQQSYS NPPEPSRQWS SSAHAQPSYN PEPSRPWNSG HQSQNPEASR  1200
QWSHHHGKQE RYNPTDGRNS YDQHWRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.18365	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32976716	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066698	0.0	AK066698.1 Oryza sativa Japonica Group cDNA clone:J013073H18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620702.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A2WYS3	0.0	A2WYS3_ORYSI; Uncharacterized protein
STRING	ORUFI01G46480.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-104	HB-other family protein