 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA005001-PA |
| Common Name | OsI_04824 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
GRAS |
| Protein Properties |
Length: 275aa MW: 30505.7 Da PI: 6.717 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA005001-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 209.4 | 2e-64 | 72 | 274 | 167 | 374 |
GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
+Ae lg+ +ef+ + + le+l++++L v+ +Ea+a+n+vl+lh++++es + +vL+++++lsP+ +v+veq+a hn++ Fl rf+e
BGIOSGA005001-PA 72 AYAEGLGMYLEFRG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFME 160
58999*********.799******************************88877777...8********************************* PP
GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
al+yy+alfd+l+a lpr + r vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ ++a+ l + + +dgy+v
BGIOSGA005001-PA 161 ALHYYAALFDALDAALPRYDARRERVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGDGYTV 251
**********************************************************************754..467777777777****** PP
GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
+e+ +lvlgWk++p++++S+W+
BGIOSGA005001-PA 252 ADEKVCLVLGWKGKPVIAASCWK 274
**********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MEMDKFSSSY QPSWPPAQAT VDVVGSVETP ARRAFQRVAS FFVQELLDRR ASAGAGPCEH 60
GVLHPAVVVR EAYAEGLGMY LEFRGINRGL ESLHIDDLGV DADEAVAINS VLELHSVVKE 120
SRGALNSVLQ TIRKLSPRAF VLVEQDAGHN GPFFLGRFME ALHYYAALFD ALDAALPRYD 180
ARRERVEQFH FGAEIRNVVG CEGAARVERH ERADQWRRRM SRAGFQSVPI KMAAKAREWL 240
DENAGGDGYT VADEKVCLVL GWKGKPVIAA SCWKC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. |
| GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. |
| GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
