PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004859-PA
Common NameOsI_04550
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 895aa    MW: 96558.5 Da    PI: 6.3646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004859-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000276987351355
                       HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  BGIOSGA004859-PA 698 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 735
                       77899************6.....5899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-357193IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.15E-4679736No hitNo description
PROSITE profilePS5088810.594685734IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-4698738IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-5698739IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQTI AVIPVLPRGV IQLGSTKMVM  180
EEAAFIDHVR SLFQQLGSST AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHL EDLAGGGNTY  240
NDDMINHQFR HQKSPASTIQ SFNPVQQFYA GPTFCCPVTI ASRCDLFQPD HGSTFTLNSQ  300
SEDNRSTALL KNSVSHSKTS NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI  360
TIGRTASSSC TGKTNIINKV DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY  420
AIPHAALVDS TQYSDCFQSL LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN  480
SSDLAELLAS PIPLELTGGN DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC  540
VDDDFTGLIT EADPDQLLDA IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG  600
PSSGPIFCNF ASVAPVAIKT EGPAAGSRQS SSNIDKSAGC SQTQESYKSQ IRLWVENNHS  660
VGSDSLSTGQ CKRSDEIGKS NRKRSRPGES ARPRPKDRQM IQDRIKELRE IVPNSAKCSI  720
DTLLEKTIKH MLFLQNVAKH ADKLKGSGEP KIVSHEEGLL LKDNFEGGAT WAFEVGTRSM  780
TCPIIVEDLN PPRQMLVEML CKERGIFLEI ADQIRGLGLT ILKGVMEVRK DKIWARFAVE  840
ANKDVTRMEI FLSLVHLLEP STGSSILSAG VENTSLPRDS FFPSSIPATG FSNCL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.142870.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA2WXA50.0A2WXA5_ORYSI; Uncharacterized protein
STRINGOS01T0865600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.17e-55conserved peptide upstream open reading frame 7