PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 251aa MW: 26493 Da PI: 6.9406

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA004719-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ae BGIOSGA004719-PA 59 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAE 151 7****************************************************************************************** PP DUF260 94 lallkee 100 l+++++e BGIOSGA004719-PA 152 LEAVRAE 158 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.171	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-40	59	156	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSTERERLDE IGKKIKREPD TAGVVVAAVA GTGTGTATPI EHRVPHRLGL GGAVNTVTPC 60 AACKLLRRRC AQECPFAPYF SPHEPHKFAA VHKVFGASNV SKMLLEVGEA ERADAASSLV 120 YEANLRLRDP VYGCMGAISM LQQQVNALEA ELEAVRAEIF KRRYRQAGAA TGLMDDVQVH 180 ITAGFAAPPP PPSMHARDVV SVADAGGQGQ ELAGAPVISS ASPPVYPAGQ PSTSTTDYSS 240 LNTSEHAAYF G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	59	161	11	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	59	161	11	113	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.42531	0.0	callus\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37991542	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	0.0	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636038.1	0.0	LOB domain-containing protein 15
Swissprot	Q9AT61	7e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0D3EVQ2	0.0	A0A0D3EVQ2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YGR2	0.0	A0A0D9YGR2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FV62	0.0	A0A0E0FV62_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N4D0	0.0	A0A0E0N4D0_ORYRU; Uncharacterized protein
TrEMBL	B8ABL7	0.0	B8ABL7_ORYSI; Uncharacterized protein
TrEMBL	Q5QMB4	0.0	Q5QMB4_ORYSJ; Os01g0825000 protein
STRING	OGLUM01G39690.1	0.0	(Oryza glumipatula)
STRING	ORUFI01G39050.1	0.0	(Oryza rufipogon)
STRING	OS01T0825000-01	0.0	(Oryza sativa)
STRING	ONIVA01G40640.1	0.0	(Oryza nivara)
STRING	OBART01G35680.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-65	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]