PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004701-PA
Common NameOsI_04231
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 265aa    MW: 29895.6 Da    PI: 7.3109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004701-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781e-2452112258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                       +Dgy+WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  BGIOSGA004701-PA  52 HDGYRWRKYGQKMIRGNSFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 112
                       7***************************98999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-2542113IPR003657WRKY domain
SuperFamilySSF1182906.67E-2345114IPR003657WRKY domain
SMARTSM007742.6E-3651114IPR003657WRKY domain
PROSITE profilePS5081120.67953115IPR003657WRKY domain
PfamPF031061.2E-2453112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVKRSDNMDS SSECSRGAHK RLLQDSRSYD QENAMKKVCI GTRTEYTYAP YHDGYRWRKY  60
GQKMIRGNSF PRCYYRCTYH QDHGCPASKH VEQHNSEDPP LFRVIYTNEH TCGTSNSASD  120
YMASSMQIQQ IADASLRKAQ AAERLRKAEV ETPRLMHFPP PRCSGGYNMA MKEEKDVIVS  180
SLLTVIRGCH IAESAGNNSA AALPVNRPPP AVARSDHYSC SYAISPELLP ASDDLTLDFM  240
LDSVLDPHWV EPLDLAWLKE STHTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-1240110369WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.10.0probable WRKY transcription factor 64
TrEMBLA2WWF10.0A2WWF1_ORYSI; Uncharacterized protein
STRINGORUFI01G38630.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-20WRKY DNA-binding protein 55