PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004423-PA
Common NameOsI_03666
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 225aa    MW: 25010.2 Da    PI: 6.4994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004423-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0687112326
                       S---SGGGGTS..--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartG..tCkyGdrCkFaHg 26 
                        e+C++f+      C++G+ C+FaHg
  BGIOSGA004423-PA  87 GEPCPDFRVAAraACPRGSGCPFAHG 112
                       5899999999999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-483114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.03784114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4119149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAYETSSDHQ LAAAAEFLAA LQVHLAGAEA SSPTWGGRCA YDEDFMMYEF KVRRCPRSRA  60
HEWTSCPYAH PGEAARRRDP SHVTYTGEPC PDFRVAARAA CPRGSGCPFA HGTFETWLHP  120
SRYRTRPCRS GMLCARPVCF FAHNDKELRI VGDDAAAATP SPRSPFTTSE DSPPPSPMDM  180
RQIVLAMQQM DARKATRSVA PKTDMLQQEL EEDAPELGWV SDLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644032.11e-166zinc finger CCCH domain-containing protein 10
SwissprotQ94JI51e-167C3H10_ORYSJ; Zinc finger CCCH domain-containing protein 10
TrEMBLA0A0E0FSV01e-165A0A0E0FSV0_ORYNI; Uncharacterized protein
TrEMBLA2WUV81e-165A2WUV8_ORYSI; Uncharacterized protein
STRINGONIVA01G34550.11e-165(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.18e-45C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]