PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003821-PA
Common NameOsI_02537
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 420aa    MW: 45440.7 Da    PI: 5.7028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003821-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-14237284355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  BGIOSGA003821-PA 237 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILSETIAYLKELE 284
                       5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-201082IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.967234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-15237288No hitNo description
Gene3DG3DSA:4.10.280.104.6E-17238294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11238284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18238299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-16240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MCSFCPDGWQ SVPGKSFASN GCAWLCNAQS ADSKAFPRKL LAKNASIQTI VCVPFMTGVL  60
ELGTTDPVSE EPNVVNRITT AFWELQLPAC SDEPISSGTP SSPSSPPTKE TGDANTVVID  120
DLFLAHSDAI LPAGGDQKEE HQLGDDLGQQ QAATAMEIDD DVIYSLIRNW DNDSSSSWIE  180
LLDHAIVSPA SCFVPWKRTE LDKEAVAGGE AAQRLLKKVV GGGGAWMNRA AGSCSIKNHV  240
MSERRRREKL NEMFLILKSL VPSIDKVDKA SILSETIAYL KELERRVQEL ESGKKVSRPA  300
KRKPRSETII GGGGGGGGAG AVKEHHHWVL SESQEGTPSD VRVIVMDKDE LHLEVQCRWK  360
ELMMTRVFDA IKSLRLDVLS VQASAPDGLL GLKIRAKYAS SAAVVPAMIS ETLRTAVAGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12238294864Transcription factor MYC2
5gnj_B1e-12238294864Transcription factor MYC2
5gnj_E1e-12238294864Transcription factor MYC2
5gnj_F1e-12238294864Transcription factor MYC2
5gnj_G1e-12238294864Transcription factor MYC2
5gnj_I1e-12238294864Transcription factor MYC2
5gnj_M1e-12238294864Transcription factor MYC2
5gnj_N1e-12238294864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRRE
2243248RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029080.0AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02.
GenBankAP0033100.0AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878345.10.0anthocyanin regulatory R-S protein
SwissprotP135261e-97ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA2WRP90.0A2WRP9_ORYSI; Uncharacterized protein
STRINGONIVA01G22920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.16e-41bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]