PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003819-PA
Common NameOsI_02533
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 448aa    MW: 49474.5 Da    PI: 6.2576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003819-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-14287334355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++N+ f +L++l+P+ +      K++Ka+iL +++ Y+k+L+
  BGIOSGA003819-PA 287 KNHVMSERRRREKLNEMFLTLKSLVPSiD------KVDKASILAETIAYLKELE 334
                       5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-3510137IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.393284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-15287338No hitNo description
SuperFamilySSF474592.62E-18287349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-18288344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11288334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-16290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MELTAEQLLL QRSEQLRELY SSLLSGECAD QQRRRRPVTA LSPEDLGNME WFYMVCMTYA  60
FRPGQCLPGK SFASNGCAWL CNAQSADSKA FPRKLLAKNA SIQTIVCVPF MNGVLELGTT  120
DPVPEEPNVV NRITTAFWEF QLLACSDEPI SSGTPSSPSS PLTKETGDAN TVLIDDLFLA  180
HSAAGGDQED HQLGNDLGQQ QAATAMEIDD DMIYSLIRNW DNDSSSSWIE LLDHVVVSPA  240
SCFVPWKRTE LDKQAVAGGG EAAQRLLKKA VGGGGAWMNR AAGSSIKNHV MSERRRREKL  300
NEMFLTLKSL VPSIDKVDKA SILAETIAYL KELERRVQEL ESGKKVSRPP KRKPCSERII  360
GGGDAGAVKE HHHWVLSESQ EGTPSNVRVI VMDKDELHLE VHCRWKELMM TRLFDAIKSL  420
RLDVLSVQAS APNGLLGLKI RAKVVSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-12288344864Transcription factor MYC2
5gnj_B3e-12288344864Transcription factor MYC2
5gnj_E3e-12288344864Transcription factor MYC2
5gnj_F3e-12288344864Transcription factor MYC2
5gnj_G3e-12288344864Transcription factor MYC2
5gnj_I3e-12288344864Transcription factor MYC2
5gnj_M3e-12288344864Transcription factor MYC2
5gnj_N3e-12288344864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297ERRRRE
2293298RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975970560.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638330.10.0anthocyanin regulatory R-S protein
TrEMBLB8AAP50.0B8AAP5_ORYSI; Uncharacterized protein
STRINGONIVA01G22920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-53bHLH family protein