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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA003806-PA |
| Common Name | OsI_02516, OsI_02517 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
LBD |
| Protein Properties |
Length: 175aa MW: 18253.6 Da PI: 5.194 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA003806-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 103.4 | 2e-32 | 26 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqq 86
aCaaC++l+r+C+++C+la++fpa +qp + f+n+ +lFG+ nv+ +l a+ ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++
BGIOSGA003806-PA 26 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLERE 118
7*********************996645456699*****************999889999********************************* PP
DUF260 87 leqlkaelallkee 100
l++lkaela++++
BGIOSGA003806-PA 119 LDCLKAELATAQSA 132
*********99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MAQPWRPFVA DISPVAVADD DDPPAACAAC AHLGRACPTG CPLARCFPAA GDQPADGRLF 60
RNAFRLFGVG NVVGFLLAAG GDPGKRRDAA VSVAYEADAR ADDPVRGAHG VVMDLERELD 120
CLKAELATAQ SALARHRQYA QPPPPPPPPP PDALDRARAL NYFCHGCCGD VDGAA
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
