PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003443-PA
Common NameOsI_01762
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 237aa    MW: 24685.8 Da    PI: 5.3325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003443-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.32e-086391043
                      HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        t+ k ++ ++  A ELS+LC+++va++ ++  
  BGIOSGA003443-PA  6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39
                      57999************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.503134IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-7640IPR002100Transcription factor, MADS-box
PfamPF003195.6E-7737IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGSGAV STAEVAVWES  60
EEGVLASYRA ILPRPEAHTL RECLELKLAR MGPSSPWCGS AAISACTCGM TRRALPTPSL  120
CLSSAMYVGS SGGGGNQPQT TPAGDDINYS DDQSFSRNAA VAAAATTTHE PTAAVSPRRL  180
SPSPPELALT SPTRPTASSP WTSVAASSSR RLLGAVLGRW VPARGRQPWP TSIRYIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2WPI41e-168A2WPI4_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2316555