PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003306-PA
Common NameOsI_01473
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 325aa    MW: 34345.6 Da    PI: 7.3103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003306-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY612.2e-19288324237
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  BGIOSGA003306-PA 288 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQ 324
                       7***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-20272324IPR003657WRKY domain
SuperFamilySSF1182903.14E-17280324IPR003657WRKY domain
PROSITE profilePS5081120.22282325IPR003657WRKY domain
SMARTSM007741.2E-9287325IPR003657WRKY domain
PfamPF031066.5E-16289324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE EAGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGSGDV NIGLDLLTTT TAGAAAGGAA  120
AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELTRSYSALY HQYLQTHRTA  180
ATTQQFLEPR ASSTAQATAD ADMAASDDEA GRGGGDGDAS SPSLSNAAAG GGGGGNKMRR  240
VGGQDETAAA APARENGEQQ AAAAAAAELP CRKPRVSVRA RSEAPMISDG CQWRKYGQKM  300
AKGNPCPRAY YRCTMAIGCP VRKQL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.399390.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977198420.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.11e-122probable WRKY transcription factor 47 isoform X1
RefseqXP_025880608.11e-123WRKY transcription factor 6 isoform X4
TrEMBLA2WNP30.0A2WNP3_ORYSI; Uncharacterized protein
STRINGONIVA01G14320.11e-123(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-32WRKY family protein