PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003303-PA
Common NameOsI_01467
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26404.4 Da    PI: 10.6949
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003303-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.4e-151250442
                      -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        +s r  tf kRr g++KKA EL  LC++ v+v+++++
  BGIOSGA003303-PA 12 AKDSTRRLTFKKRRRGLIKKAGELASLCGIGVCVVVYGE 50
                      56788999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.339150IPR002100Transcription factor, MADS-box
CDDcd002661.84E-27285No hitNo description
PRINTSPR004046.2E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21395IPR002100Transcription factor, MADS-box
PfamPF003192.3E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MARNRIILKK VAKDSTRRLT FKKRRRGLIK KAGELASLCG IGVCVVVYGE GEVKPEVWPS  60
APEARAILSR FNSAPNIDRF KRVTNQEQYL RKRIAKARER TSKADDVNRE RDATIMLYEA  120
ATGKRPMADL NVQELTNLGL VIDERINHLK ERIERLGGAA LMAPPPSTQP TEASSSLPPL  180
VPYANGAGME GNKRMKVSTH QKGWFINMST MTADAGTSAD VEGNTGVGTS ARGDMMHLSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878329.11e-175agamous-like MADS-box protein AGL80
TrEMBLA2WNN71e-177A2WNN7_ORYSI; Uncharacterized protein
STRINGORUFI01G13010.11e-176(Oryza rufipogon)
STRINGONIVA01G14270.11e-176(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.13e-23M-type_MADS family protein